Pathway-Dependent Effectiveness of Network Algorithms for Gene Prioritization

Network approaches to the genetic dissection of phenotypes in animals and humans

(2013) Insuk Lee   Animal Cells and Systems

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Caveats and pitfalls of ROC analysis in clinical microarray research (and how to avoid them)

(2011) D. Berrar et al.   BRIEFINGS IN BIOINFORMATICS

Prioritizing candidate disease genes by network-based boosting of genome-wide association data

(2011) I. Lee et al.   GENOME RESEARCH

WormBase 2012: more genomes, more data, new website

(2011) K. Yook et al.   NUCLEIC ACIDS RESEARCH

Disease Ontology: a backbone for disease semantic integration

(2011) L. M. Schriml et al.   NUCLEIC ACIDS RESEARCH

A CROC stronger than ROC: measuring, visualizing and optimizing early retrieval

(2010) S. J. Swamidass et al.   BIOINFORMATICS

Predicting genetic modifier loci using functional gene networks

(2010) I. Lee et al.   GENOME RESEARCH

It's the machine that matters: Predicting gene function and phenotype from protein networks

(2010) Peggy I. Wang et al.   Journal of Proteomics

A human functional protein interaction network and its application to cancer data analysis

(2010) Guanming Wu et al.   GENOME BIOLOGY

A statistical framework to evaluate virtual screening

(2009) Wei Zhao et al.   BMC BIOINFORMATICS

Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network

(2009) Bolan Linghu et al.   GENOME BIOLOGY

Protein networks in disease

(2008) T. Ideker et al.   GENOME RESEARCH

Managing bias in ROC curves

(2008) Robert D. Clark et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

(2008) Sara Mostafavi et al.   GENOME BIOLOGY