Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C

Belowground communication: impacts of volatile organic compounds (VOCs) from soil fungi on other soil-inhabiting organisms

(2016) Stephanie Werner et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Contribution of the outer membrane protein OmpW in Escherichia coli to complement resistance from binding to factor H

(2016) Weiyan Li et al.   MICROBIAL PATHOGENESIS

Costs of life - Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis

(2016) Daniela Zühlke et al.   Scientific Reports

Global transcriptomic responses of Escherichia coli K-12 to volatile organic compounds

(2016) Pui Yi Yung et al.   Scientific Reports

A Terpene Synthase Is Involved in the Synthesis of the Volatile Organic Compound Sodorifen of Serratia plymuthica 4Rx13

(2016) Dajana Domik et al.   Frontiers in Microbiology

Microbial Small Talk: Volatiles in Fungal–Bacterial Interactions

(2016) Ruth Schmidt et al.   Frontiers in Microbiology

Non-random species loss in bacterial communities reduces antifungal volatile production

(2015) W. H. Gera Hol et al.   ECOLOGY

Volatile affairs in microbial interactions

(2015) Ruth Schmidt et al.   ISME Journal

Chemotaxis Control of Transient Cell Aggregation

(2015) Gladys Alexandre   JOURNAL OF BACTERIOLOGY

Volatiles in Inter-Specific Bacterial Interactions

(2015) Olaf Tyc et al.   Frontiers in Microbiology

Antibiotic Resistance Modulation and Modes of Action of (-)-α-Pinene in Campylobacter jejuni

(2015) Jasna Kovač et al.   PLoS One

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Metabolite transfer with the fermentation product 2,3-butanediol enhances virulence by Pseudomonas aeruginosa

(2014) Arvind Venkataraman et al.   ISME Journal

Bacterial Flagellin-Specific Chaperone FliS Interacts with Anti-Sigma Factor FlgM

(2014) A. Galeva et al.   JOURNAL OF BACTERIOLOGY

Methyl-accepting chemotaxis proteins 3 and 4 are responsible for Campylobacter jejuni chemotaxis and jejuna colonization in mice in response to sodium deoxycholate

(2014) Z. Li et al.   JOURNAL OF MEDICAL MICROBIOLOGY

The impact of plant volatiles on bacterial quorum sensing

(2014) A. Ahmad et al.   LETTERS IN APPLIED MICROBIOLOGY

Comprehensive Absolute Quantification of the Cytosolic Proteome ofBacillus subtilisby Data Independent, Parallel Fragmentation in Liquid Chromatography/Mass Spectrometry (LC/MSE)

(2014) Jan Muntel et al.   MOLECULAR & CELLULAR PROTEOMICS

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Volatile-mediated interactions between phylogenetically different soil bacteria

(2014) Paolina Garbeva et al.   Frontiers in Microbiology

Underground signals carried through common mycelial networks warn neighbouring plants of aphid attack

(2013) Zdenka Babikova et al.   ECOLOGY LETTERS

Volatiles produced by the mycophagous soil bacteriumCollimonas

(2013) Paolina Garbeva et al.   FEMS MICROBIOLOGY ECOLOGY

Molecular Mechanism of Bacterial Persistence by HipA

(2013) Elsa Germain et al.   MOLECULAR CELL

Biochemical Characterization of UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-2,6-diaminopimelate ligase (MurE) from Verrucomicrobium spinosum DSM 4136T

(2013) Sean E. McGroty et al.   PLoS One

Interspecific bacterial sensing through airborne signals modulates locomotion and drug resistance

(2013) Kwang-sun Kim et al.   Nature Communications

Volatile Mediated Interactions Between Bacteria and Fungi in the Soil

(2012) Uta Effmert et al.   JOURNAL OF CHEMICAL ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

TIGRFAMs and Genome Properties in 2013

(2012) Daniel H. Haft et al.   NUCLEIC ACIDS RESEARCH

An exclusion list based label-free proteome quantification approach using an LTQ Orbitrap

(2012) Jan Muntel et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Fungal volatile organic compounds: A review with emphasis on their biotechnological potential

(2012) Shannon U. Morath et al.   Fungal Biology Reviews

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Production of plant growth modulating volatiles is widespread among rhizosphere bacteria and strongly depends on culture conditions

(2011) D. Blom et al.   ENVIRONMENTAL MICROBIOLOGY

Functional Characterization of Seven  -Glutamylpolyamine Synthetase Genes and the bauRABCD Locus for Polyamine and  -Alanine Utilization in Pseudomonas aeruginosa PAO1

(2011) X. Yao et al.   JOURNAL OF BACTERIOLOGY

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

Structure and function of the symbiosis partners of the lung lichen (Lobaria pulmonaria L. Hoffm.) analyzed by metaproteomics

(2011) Thomas Schneider et al.   PROTEOMICS

Identification and microbial production of a terpene-based advanced biofuel

(2011) Pamela P. Peralta-Yahya et al.   Nature Communications

Octamethylbicyclo[3.2.1]octadienes from the Rhizobacterium Serratia odorifera

(2010) Stephan H. von Reuß et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Crystal Structure and Acyl Chain Selectivity ofEscherichia coliLpxD, theN-Acyltransferase of Lipid A Biosynthesis

(2009) Craig M. Bartling et al.   BIOCHEMISTRY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Inter-specific Interactions Between Carbon-limited Soil Bacteria Affect Behavior and Gene Expression

(2009) Paolina Garbeva et al.   MICROBIAL ECOLOGY

The MiST2 database: a comprehensive genomics resource on microbial signal transduction

(2009) Luke E. Ulrich et al.   NUCLEIC ACIDS RESEARCH

Anaerobic Regulation of Citrate Fermentation by CitAB inEscherichia coli

(2008) Kaneyoshi YAMAMOTO et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Inverse regulatory coordination of motility and curli-mediated adhesion in Escherichia coli

(2008) C. Pesavento et al.   GENES & DEVELOPMENT

Biochemistry and Molecular Genetics of the Biosynthesis of the Earthy Odorant Methylisoborneol inStreptomyces coelicolor

(2008) Chieh-Mei Wang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY