A temporal proteome dynamics study reveals the molecular basis of induced phenotypic resistance in Mycobacterium smegmatis at sub-lethal rifampicin concentrations

DevS/DosS sensor is bifunctional and its phosphatase activity precludes aerobic DevR/DosR regulon expression inMycobacterium tuberculosis

(2016) Kohinoor Kaur et al.   FEBS Journal

Novel TetR family transcriptional factor regulates expression of multiple transport-related genes and affects rifampicin resistance in Mycobacterium smegmatis

(2016) Huicong Liu et al.   Scientific Reports

Toward Resolving the Paradox of the Critical Role of the DosR Regulon inMycobacterium tuberculosisPersistence and Active Disease

(2015) Martin I. Voskuil et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Global analyses of TetR family transcriptional regulators in mycobacteria indicates conservation across species and diversity in regulated functions

(2015) Ricardo J. C. Balhana et al.   BMC GENOMICS

Effect of Rifampicin and Gentamicin on Shiga Toxin 2 Expression Level and the SOS Response inEscherichia coliO104:H4

(2015) Sukayna M. Fadlallah et al.   Foodborne Pathogens and Disease

Macrophage defense mechanisms against intracellular bacteria

(2015) Günter Weiss et al.   IMMUNOLOGICAL REVIEWS

Transcriptional and proteomic analyses of two-component response regulators in multidrug-resistant Mycobacterium tuberculosis

(2015) Lei Zhou et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Quantitative Proteomics Reveals Novel Insights into Isoniazid Susceptibility in Mycobacteria Mediated by a Universal Stress Protein

(2015) Xinling Hu et al.   JOURNAL OF PROTEOME RESEARCH

The association between sterilizing activity and drug distribution into tuberculosis lesions

(2015) Brendan Prideaux et al.   NATURE MEDICINE

Rifampin Induces Hydroxyl Radical Formation in Mycobacterium tuberculosis

(2014) Giovanni Piccaro et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Quantitative Mass Spectrometry Reveals Plasticity of Metabolic Networks inMycobacterium smegmatis

(2014) Tarun Chopra et al.   MOLECULAR & CELLULAR PROTEOMICS

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

Microbiological effects of sublethal levels of antibiotics

(2014) Dan I. Andersson et al.   NATURE REVIEWS MICROBIOLOGY

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

A Novel marRAB Operon Contributes to the Rifampicin Resistance in Mycobacterium smegmatis

(2014) Haiwei Zhang et al.   PLoS One

A soil actinobacterium scavenges atmospheric H2 using two membrane-associated, oxygen-dependent [NiFe] hydrogenases

(2014) C. Greening et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selection of antibiotic resistance at very low antibiotic concentrations

(2014) Linus Sandegren   UPSALA JOURNAL OF MEDICAL SCIENCES

Delayed bactericidal response of Mycobacterium tuberculosis to bedaquiline involves remodelling of bacterial metabolism

(2014) Anil Koul et al.   Nature Communications

A medicinal chemists’ guide to the unique difficulties of lead optimization for tuberculosis

(2013) Véronique Dartois et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

β-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity

(2013) A. Gutierrez et al.   Nature Communications

RpoS Plays a Central Role in the SOS Induction by Sub-Lethal Aminoglycoside Concentrations in Vibrio cholerae

(2013) Zeynep Baharoglu et al.   PLoS Genetics

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

(2012) Jeffrey T. Leek et al.   BIOINFORMATICS

Selection of resistance at lethal and non-lethal antibiotic concentrations

(2012) Diarmaid Hughes et al.   CURRENT OPINION IN MICROBIOLOGY

The mechanism of redox sensing in Mycobacterium tuberculosis

(2012) Shabir Ahmad Bhat et al.   FREE RADICAL BIOLOGY AND MEDICINE

In silico analysis of DosR regulon proteins of Mycobacterium tuberculosis

(2012) Suganya Selvaraj et al.   GENE

A Copper-responsive Global Repressor Regulates Expression of Diverse Membrane-associated Transporters and Bacterial Drug Resistance in Mycobacteria

(2012) Muding Rao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Phosphoproteome ofPristionchus pacificusProvides Insights into Architecture of Signaling Networks in Nematode Models

(2012) Nadine Borchert et al.   MOLECULAR & CELLULAR PROTEOMICS

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Mycobacterium tuberculosis Growth following Aerobic Expression of the DosR Regulon

(2012) Kyle Minch et al.   PLoS One

Eradication of bacterial persisters with antibiotic-generated hydroxyl radicals

(2012) Sarah Schmidt Grant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Vibrio cholerae Triggers SOS and Mutagenesis in Response to a Wide Range of Antibiotics: a Route towards Multiresistance

(2011) Zeynep Baharoglu et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Selection of Resistant Bacteria at Very Low Antibiotic Concentrations

(2011) Erik Gullberg et al.   PLoS Pathogens

Mycobacterium tuberculosisUvrD1 and UvrA Proteins Suppress DNA Strand Exchange Promoted by Cognate and Noncognate RecA Proteins

(2010) Pawan Singh et al.   BIOCHEMISTRY

Influence of ciprofloxacin and vancomycin on mutation rate and transposition of IS256 in Staphylococcus aureus

(2010) Michael Nagel et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Strains of the East Asian (W/Beijing) Lineage of Mycobacterium tuberculosis Are DosS/DosT-DosR Two-Component Regulatory System Natural Mutants

(2010) A. Fallow et al.   JOURNAL OF BACTERIOLOGY

PepD Participates in the Mycobacterial Stress Response Mediated through MprAB and SigE

(2010) M. J. White et al.   JOURNAL OF BACTERIOLOGY

Sublethal Antibiotic Treatment Leads to Multidrug Resistance via Radical-Induced Mutagenesis

(2010) Michael A. Kohanski et al.   MOLECULAR CELL

How antibiotics kill bacteria: from targets to networks

(2010) Michael A. Kohanski et al.   NATURE REVIEWS MICROBIOLOGY

The Battle for Iron between Bacterial Pathogens and Their Vertebrate Hosts

(2010) Eric P. Skaar   PLoS Pathogens

The DosR regulon of M. tuberculosis and antibacterial tolerance

(2009) I.L. Bartek et al.   TUBERCULOSIS

FutA2 Is a Ferric Binding Protein fromSynechocystisPCC 6803

(2008) Adriana Badarau et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Proteomic Response ofMycobacterium smegmatisto Anti-Tuberculosis Drugs Suggests Targeted Pathways

(2008) Rong Wang et al.   JOURNAL OF PROTEOME RESEARCH

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Evolution of polyketide synthases in bacteria

(2008) C. P. Ridley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rifamycin antibiotic resistance by ADP-ribosylation: Structure and diversity of Arr

(2008) J. Baysarowich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA