Multiple measures could alleviate long-branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae)
出版年份 2017 全文链接
标题
Multiple measures could alleviate long-branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae)
作者
关键词
-
出版物
Scientific Reports
Volume 7, Issue 1, Pages -
出版商
Springer Nature
发表日期
2017-01-25
DOI
10.1038/srep41005
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
- (2015) Siavash Mirarab et al. BIOINFORMATICS
- A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway
- (2015) Mark A. Miller et al. Evolutionary Bioinformatics
- Does complete plastid genome sequencing improve species discrimination and phylogenetic resolution in Araucaria ?
- (2015) Markus Ruhsam et al. Molecular Ecology Resources
- The Root of Flowering Plants and Total Evidence
- (2015) V. V. Goremykin et al. SYSTEMATIC BIOLOGY
- ASTRAL: genome-scale coalescent-based species tree estimation
- (2014) S. Mirarab et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Plastid phylogenomics and green plant phylogeny: almost full circle but not quite there
- (2014) Charles C Davis et al. BMC BIOLOGY
- TreSpEx–-Detection of Misleading Signal in Phylogenetic Reconstructions Based on Tree Information
- (2014) Torsten H. Struck Evolutionary Bioinformatics
- Coalescent Methods Are Robust to the Simultaneous Effects of Long Branches and Incomplete Lineage Sorting
- (2014) L. Liu et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evolution and biogeography of gymnosperms
- (2014) Xiao-Quan Wang et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Chloroplast Phylogenomic Analyses Resolve Deep-Level Relationships of an Intractable Bamboo Tribe Arundinarieae (Poaceae)
- (2014) Peng-Fei Ma et al. SYSTEMATIC BIOLOGY
- Coalescent versus Concatenation Methods and the Placement of Amborella as Sister to Water Lilies
- (2014) Zhenxiang Xi et al. SYSTEMATIC BIOLOGY
- State-of the art methodologies dictate new standards for phylogenetic analysis
- (2013) Maria Anisimova et al. BMC EVOLUTIONARY BIOLOGY
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylogenomics and Coalescent Analyses Resolve Extant Seed Plant Relationships
- (2013) Zhenxiang Xi et al. PLoS One
- treePL: divergence time estimation using penalized likelihood for large phylogenies
- (2012) Stephen A. Smith et al. BIOINFORMATICS
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)
- (2012) Matthew Parks et al. BMC EVOLUTIONARY BIOLOGY
- Bayesian Phylogenetics with BEAUti and the BEAST 1.7
- (2012) Alexei J. Drummond et al. MOLECULAR BIOLOGY AND EVOLUTION
- Three genome-based phylogeny of Cupressaceae s.l.: Further evidence for the evolution of gymnosperms and Southern Hemisphere biogeography
- (2012) Zu-Yu Yang et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing
- (2012) Wambui Njuguna et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Phylogenetic relationships among the New World cypresses (Hesperocyparis; Cupressaceae): evidence from noncoding chloroplast DNA sequences
- (2012) Randall G. Terry et al. PLANT SYSTEMATICS AND EVOLUTION
- NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
- (2012) Ravi K. Patel et al. PLoS One
- Distribution of living Cupressaceae reflects the breakup of Pangea
- (2012) K. Mao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
- (2012) S. Song et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
- (2012) Ruibang Luo et al. GigaScience
- ProtTest 3: fast selection of best-fit models of protein evolution
- (2011) Diego Darriba et al. BIOINFORMATICS
- What is the phylogenetic signal limit from mitogenomes? The reconciliation between mitochondrial and nuclear data in the Insecta class phylogeny
- (2011) Gerard Talavera et al. BMC EVOLUTIONARY BIOLOGY
- Loss of Different Inverted Repeat Copies from the Chloroplast Genomes of Pinaceae and Cupressophytes and Influence of Heterotachy on the Evaluation of Gymnosperm Phylogeny
- (2011) Chung-Shien Wu et al. Genome Biology and Evolution
- Systematic Error in Seed Plant Phylogenomics
- (2011) Bojian Zhong et al. Genome Biology and Evolution
- A Method for Inferring the Rate of Evolution of Homologous Characters that Can Potentially Improve Phylogenetic Inference, Resolve Deep Divergence and Correct Systematic Biases
- (2011) Carla A. Cummins et al. SYSTEMATIC BIOLOGY
- Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
- (2011) Hervé Philippe et al. PLOS BIOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Comparative Chloroplast Genomics Reveals the Evolution of Pinaceae Genera and Subfamilies
- (2010) Ching-Ping Lin et al. Genome Biology and Evolution
- Ecdysozoan Mitogenomics: Evidence for a Common Origin of the Legged Invertebrates, the Panarthropoda
- (2010) Omar Rota-Stabelli et al. Genome Biology and Evolution
- Automated Removal of Noisy Data in Phylogenomic Analyses
- (2010) Vadim V. Goremykin et al. JOURNAL OF MOLECULAR EVOLUTION
- The Position of Gnetales among Seed Plants: Overcoming Pitfalls of Chloroplast Phylogenomics
- (2010) B. Zhong et al. MOLECULAR BIOLOGY AND EVOLUTION
- Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships
- (2010) K. S. Pick et al. MOLECULAR BIOLOGY AND EVOLUTION
- Diversification and biogeography of Juniperus (Cupressaceae): variable diversification rates and multiple intercontinental dispersals
- (2010) Kangshan Mao et al. NEW PHYTOLOGIST
- A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants
- (2010) S. Mathews et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
- (2009) Nicolas Lartillot et al. BIOINFORMATICS
- Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
- (2009) Matthew Parks et al. BMC BIOLOGY
- On the phylogenetic position of Myzostomida: Can 77 genes get it wrong?
- (2009) Christoph Bleidorn et al. BMC EVOLUTIONARY BIOLOGY
- Phylogenetic-Signal Dissection of Nuclear Housekeeping Genes Supports the Paraphyly of Sponges and the Monophyly of Eumetazoa
- (2009) E. A. Sperling et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"
- (2009) V. Hampl et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Different gymnosperm outgroups have (mostly) congruent signal regarding the root of flowering plant phylogeny
- (2008) Sean W. Graham et al. AMERICAN JOURNAL OF BOTANY
- SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of Blastocystis
- (2008) Martin Kostka et al. BMC BIOINFORMATICS
- Improvement of molecular phylogenetic inference and the phylogeny of Bilateria
- (2008) N. Lartillot et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started