Organic nitrogen rearranges both structure and activity of the soil-borne microbial seedbank

Temporal variability of soil microbial communities after application of dicyandiamide-treated swine slurry and mineral fertilizers

(2016) Afnan K.A. Suleiman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland

(2016) Noriko A. Cassman et al.   Scientific Reports

Effects of Different Organic Manures on the Biochemical and Microbial Characteristics of Albic Paddy Soil in a Short-Term Experiment

(2015) Qian Zhang et al.   PLoS One

Long-term impacts of manure, straw, and fertilizer on amino sugars in a silty clay loam soil under temperate conditions

(2013) Xueli Ding et al.   BIOLOGY AND FERTILITY OF SOILS

Structural and functional variation in soil fungal communities associated with litter bags containing maize leaf

(2013) Eiko E. Kuramae et al.   FEMS MICROBIOLOGY ECOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Multivariate analyses in soil microbial ecology: a new paradigm

(2012) Jean Thioulouse et al.   ENVIRONMENTAL AND ECOLOGICAL STATISTICS

Acidobacterial community responses to agricultural management of soybean in Amazon forest soils

(2012) Acácio A. Navarrete et al.   FEMS MICROBIOLOGY ECOLOGY

The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?

(2012) M. Francesca Cotrufo et al.   GLOBAL CHANGE BIOLOGY

Community assembly, species richness and nestedness of arbuscular mycorrhizal fungi in agricultural soils

(2012) ERIK VERBRUGGEN et al.   MOLECULAR ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Revisiting Guerry’s data: Introducing spatial constraints in multivariate analysis

(2011) Stéphane Dray et al.   Annals of Applied Statistics

Simultaneous analysis of a sequence of paired ecological tables: A comparison of several methods

(2011) Jean Thioulouse   Annals of Applied Statistics

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Distance-based multivariate analyses confound location and dispersion effects

(2011) David I. Warton et al.   Methods in Ecology and Evolution

Responses of bacterial and archaeal ammonia oxidizers to soil organic and fertilizer amendments under long-term management

(2010) Ella Wessén et al.   APPLIED SOIL ECOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Terrestrial phosphorus limitation: mechanisms, implications, and nitrogen–phosphorus interactions

(2010) Peter M. Vitousek et al.   ECOLOGICAL APPLICATIONS

What is recalcitrant soil organic matter?

(2010) Markus Kleber   Environmental Chemistry

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

(2010) S. Lucker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dual role of lignin in plant litter decomposition in terrestrial ecosystems

(2010) A. T. Austin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessing amendment properties of digestate by studying the organic matter composition and the degree of biological stability during the anaerobic digestion of the organic fraction of MSW

(2009) Fulvia Tambone et al.   BIORESOURCE TECHNOLOGY

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Labile and recalcitrant plant fractions are utilised by distinct microbial communities in soil: Independent of the presence of roots and mycorrhizal fungi

(2008) Eric Paterson et al.   SOIL BIOLOGY & BIOCHEMISTRY