Genome-scale DNA variant analysis and functional validation of a SNP underlying yellow fruit color in wild strawberry

ClicO FS: an interactive web-based service of Circos: Fig. 1.

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Re-annotation of the woodland strawberry (Fragaria vesca) genome

(2015) Omar Darwish et al.   BMC GENOMICS

The crucial role of PpMYB10.1 in anthocyanin accumulation in peach and relationships between its allelic type and skin color phenotype

(2015) Pham Anh Tuan et al.   BMC PLANT BIOLOGY

Transcript Quantification by RNA-Seq Reveals Differentially Expressed Genes in the Red and Yellow Fruits of Fragaria vesca

(2015) Yuchao Zhang et al.   PLoS One

Somatic embryogenesis, tetraploidy, and variant leaf morphology in transgenic diploid strawberry (Fragaria vesca subspecies vesca ‘Hawaii 4’)

(2014) Qian Zhang et al.   BMC PLANT BIOLOGY

Evolutionary Origins and Dynamics of Octoploid Strawberry Subgenomes Revealed by Dense Targeted Capture Linkage Maps

(2014) Jacob A. Tennessen et al.   Genome Biology and Evolution

A Conserved Network of Transcriptional Activators and Repressors Regulates Anthocyanin Pigmentation in Eudicots

(2014) Nick W. Albert et al.   PLANT CELL

Floral Transcriptomes in Woodland Strawberry Uncover Developing Receptacle and Anther Gene Networks

(2014) C. A. Hollender et al.   PLANT PHYSIOLOGY

Effect of calcium on strawberry fruit flavonoid pathway gene expression and anthocyanin accumulation

(2014) Wenping Xu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Engineering the anthocyanin regulatory complex of strawberry (Fragaria vesca)

(2014) Kui Lin-Wang et al.   Frontiers in Plant Science

SGR: an online genomic resource for the woodland strawberry

(2013) Omar Darwish et al.   BMC PLANT BIOLOGY

Profiling polyphenols of two diploid strawberry (Fragaria vesca) inbred lines using UHPLC-HRMSn

(2013) Jianghao Sun et al.   FOOD CHEMISTRY

MYB10plays a major role in the regulation of flavonoid/phenylpropanoid metabolism during ripening ofFragaria×ananassafruits

(2013) Laura Medina-Puche et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-Scale Transcriptomic Insights into Early-Stage Fruit Development in Woodland Strawberry Fragaria vesca

(2013) C. Kang et al.   PLANT CELL

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Retrotransposons Control Fruit-Specific, Cold-Dependent Accumulation of Anthocyanins in Blood Oranges

(2012) E. Butelli et al.   PLANT CELL

Mutation in TERMINAL FLOWER1 Reverses the Photoperiodic Requirement for Flowering in the Wild Strawberry Fragaria vesca

(2012) E. A. Koskela et al.   PLANT PHYSIOLOGY

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

The TFL1 homologue KSN is a regulator of continuous flowering in rose and strawberry

(2011) Hikaru Iwata et al.   PLANT JOURNAL

Dissecting Plant Genomes with the PLAZA Comparative Genomics Platform

(2011) M. Van Bel et al.   PLANT PHYSIOLOGY

Flower and early fruit development in a diploid strawberry, Fragaria vesca

(2011) Courtney A. Hollender et al.   PLANTA

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

An R2R3 MYB transcription factor associated with regulation of the anthocyanin biosynthetic pathway in Rosaceae

(2010) Kui Lin-Wang et al.   BMC PLANT BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Haploid plants produced by centromere-mediated genome elimination

(2010) Maruthachalam Ravi et al.   NATURE

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

The Composition and Origins of Genomic Variation among Individuals of the Soybean Reference Cultivar Williams 82

(2010) W. J. Haun et al.   PLANT PHYSIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

An inbred line of the diploid strawberry Fragaria vesca f. semperflorens for genomic and molecular genetic studies in the Rosaceae

(2009) Janet P Slovin et al.   Plant Methods

Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors

(2008) Eugenio Butelli et al.   NATURE BIOTECHNOLOGY