Transcript Quantification by RNA-Seq Reveals Differentially Expressed Genes in the Red and Yellow Fruits of Fragaria vesca

Detachment-accelerated ripening and senescence of strawberry (Fragaria × ananassa Duch. cv. Akihime) fruit and the regulation role of multiple phytohormones

(2014) Jingxin Chen et al.   ACTA PHYSIOLOGIAE PLANTARUM

Dihydroflavonol 4-Reductase Genes Encode Enzymes with Contrasting Substrate Specificity and Show Divergent Gene Expression Profiles in Fragaria Species

(2014) Silvija Miosic et al.   PLoS One

Engineering the anthocyanin regulatory complex of strawberry (Fragaria vesca)

(2014) Kui Lin-Wang et al.   Frontiers in Plant Science

Characterisation of the wheat (triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat

(2013) Youko Oono et al.   BMC GENOMICS

Genetic Dissection of a Major Anthocyanin QTL Contributing to Pollinator-Mediated Reproductive Isolation Between Sister Species ofMimulus

(2013) Yao-Wu Yuan et al.   GENETICS

MYB10plays a major role in the regulation of flavonoid/phenylpropanoid metabolism during ripening ofFragaria×ananassafruits

(2013) Laura Medina-Puche et al.   JOURNAL OF EXPERIMENTAL BOTANY

Increased accumulation of anthocyanins in Fragaria chiloensis fruits by transient suppression of FcMYB1 gene

(2013) Ariel Salvatierra et al.   PHYTOCHEMISTRY

Heterologous expression of gentian MYB1R transcription factors suppresses anthocyanin pigmentation in tobacco flowers

(2013) Takashi Nakatsuka et al.   PLANT CELL REPORTS

The R2R3-MYB, bHLH, WD40, and related transcription factors in flavonoid biosynthesis

(2012) Lei Zhao et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

RNAi-Mediated Silencing of the Flavanone 3-Hydroxylase Gene and Its Effect on Flavonoid Biosynthesis in Strawberry Fruit

(2012) Fei Jiang et al.   JOURNAL OF PLANT GROWTH REGULATION

Identification of differentially expressed genes related to coloration in red/green mutant pear (Pyrus communis L.)

(2012) Jun Wu et al.   Tree Genetics & Genomes

Recent advances in the transcriptional regulation of the flavonoid biosynthetic pathway

(2011) Imène Hichri et al.   JOURNAL OF EXPERIMENTAL BOTANY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Genome-scale transcriptome analysis of the desert poplar, Populus euphratica

(2011) Q. Qiu et al.   TREE PHYSIOLOGY

Improving RNA-Seq expression estimates by correcting for fragment bias

(2011) Adam Roberts et al.   GENOME BIOLOGY

An R2R3 MYB transcription factor associated with regulation of the anthocyanin biosynthetic pathway in Rosaceae

(2010) Kui Lin-Wang et al.   BMC PLANT BIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

Comparison of transcriptional profiles of flavonoid genes and anthocyanin contents during fruit development of two botanical forms of Fragaria chiloensis ssp. chiloensis

(2010) Ariel Salvatierra et al.   PHYTOCHEMISTRY

A SQUAMOSA MADS Box Gene Involved in the Regulation of Anthocyanin Accumulation in Bilberry Fruits

(2010) L. Jaakola et al.   PLANT PHYSIOLOGY

MYB transcription factors in Arabidopsis

(2010) Christian Dubos et al.   TRENDS IN PLANT SCIENCE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

De novo transcriptome assembly with ABySS

(2009) I. Birol et al.   BIOINFORMATICS

RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing

(2009) Brian T. Wilhelm et al.   METHODS

CPC, a Single-Repeat R3 MYB, Is a Negative Regulator of Anthocyanin Biosynthesis in Arabidopsis

(2009) Hui-Fen Zhu et al.   Molecular Plant

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids

(2008) Yoshikazu Tanaka et al.   PLANT JOURNAL

MYB transcription factors that colour our fruit

(2008) Andrew C. Allan et al.   TRENDS IN PLANT SCIENCE