Mining large-scale response networks reveals ‘topmost activities’ in Mycobacterium tuberculosis infection

The Immune Response in Tuberculosis

(2013) Anne O'Garra et al.   Annual Review of Immunology

Current trends in modeling host-pathogen interactions

(2013) Sumanta Mukherjee et al.   Wiley Interdisciplinary Reviews-Data Mining and Knowledge Discovery

Decisions About Dendritic Cells: Past, Present, and Future

(2012) Ralph M. Steinman   Annual Review of Immunology

Protein-protein interaction networks: unraveling the wiring of molecular machines within the cell

(2012) J. De Las Rivas et al.   Briefings in Functional Genomics

Studying protein-protein interaction networks: a systems view on diseases

(2012) F. Jordan et al.   Briefings in Functional Genomics

Biological network analysis: insights into structure and functions

(2012) X. Ma et al.   Briefings in Functional Genomics

Genome Expression Analysis of Nonproliferating Intracellular Salmonella enterica Serovar Typhimurium Unravels an Acid pH-Dependent PhoP-PhoQ Response Essential for Dormancy

(2012) Cristina Núñez-Hernández et al.   INFECTION AND IMMUNITY

Rewiring the dynamic interactome

(2012) Melissa J. Davis et al.   Molecular BioSystems

Cytokines of the γc family control CD4+ T cell differentiation and function

(2012) Hidehiro Yamane et al.   NATURE IMMUNOLOGY

Global Transcriptome Analysis in Influenza-Infected Mouse Lungs Reveals the Kinetics of Innate and Adaptive Host Immune Responses

(2012) Claudia Pommerenke et al.   PLoS One

Mathematical models of malaria - a review

(2011) Sandip Mandal et al.   MALARIA JOURNAL

Initiation and regulation of T-cell responses in tuberculosis

(2011) K B Urdahl et al.   Mucosal Immunology

The role of IL-10 in immune regulation during M. tuberculosis infection

(2011) P S Redford et al.   Mucosal Immunology

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Current understanding of Th2 cell differentiation and function

(2011) Zhenhu Li et al.   Protein & Cell

BioGraph: unsupervised biomedical knowledge discovery via automated hypothesis generation

(2011) Anthony ML Liekens et al.   GENOME BIOLOGY

Global modeling of transcriptional responses in interaction networks

(2010) Leo Lahti et al.   BIOINFORMATICS

Uniformly curated signaling pathways reveal tissue-specific cross-talks and support drug target discovery

(2010) Tamás Korcsmáros et al.   BIOINFORMATICS

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Intensity-based analysis of dual-color gene expression data as an alternative to ratio-based analysis to enhance reproducibility

(2010) Koen Bossers et al.   BMC GENOMICS

Construction of a large scale integrated map of macrophage pathogen recognition and effector systems

(2010) Sobia Raza et al.   BMC Systems Biology

Genome-wide Analysis of the Host Intracellular Network that Regulates Survival of Mycobacterium tuberculosis

(2010) Dhiraj Kumar et al.   CELL

Mycobacterium tuberculosis Activates Human Macrophage Peroxisome Proliferator-Activated Receptor   Linking Mannose Receptor Recognition to Regulation of Immune Responses

(2010) M. V. S. Rajaram et al.   JOURNAL OF IMMUNOLOGY

The role of calcium signaling in phagocytosis

(2010) Paula Nunes et al.   JOURNAL OF LEUKOCYTE BIOLOGY

An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis

(2010) Matthew P. R. Berry et al.   NATURE

Regulation of antigen presentation by Mycobacterium tuberculosis: a role for Toll-like receptors

(2010) Clifford V. Harding et al.   NATURE REVIEWS MICROBIOLOGY

Pathway Commons, a web resource for biological pathway data

(2010) E. G. Cerami et al.   NUCLEIC ACIDS RESEARCH

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

(2010) David Warde-Farley et al.   NUCLEIC ACIDS RESEARCH

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

NetPath: a public resource of curated signal transduction pathways

(2010) Kumaran Kandasamy et al.   GENOME BIOLOGY

Mathematical and computational approaches can complement experimental studies of host-pathogen interactions

(2009) Denise E. Kirschner et al.   CELLULAR MICROBIOLOGY

A role for IL-18 in protective immunity againstMycobacterium tuberculosis

(2009) Bianca E. Schneider et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

The role of cytokines in the initiation, expansion, and control of cellular immunity to tuberculosis

(2009) Andrea M. Cooper et al.   IMMUNOLOGICAL REVIEWS

A systems perspective of host–pathogen interactions: predicting disease outcome in tuberculosis

(2009) Karthik Raman et al.   Molecular BioSystems

Gene Expression Profiling during Early Acute Febrile Stage of Dengue Infection Can Predict the Disease Outcome

(2009) Eduardo J. M. Nascimento et al.   PLoS One

Evasion and subversion of antigen presentation byMycobacterium tuberculosis

(2009) A. Baena et al.   TISSUE ANTIGENS

Wnt5A/CaMKII Signaling Contributes to the Inflammatory Response of Macrophages and Is a Target for the Antiinflammatory Action of Activated Protein C and Interleukin-10

(2008) Claudia Pereira et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

Protein networks in disease

(2008) T. Ideker et al.   GENOME RESEARCH