ASGARD: an open-access database of annotated transcriptomes for emerging model arthropod species

When single cell technology meets omics, the new toolbox of analytical biotechnology is emerging

(2012) Wei E Huang et al.   CURRENT OPINION IN BIOTECHNOLOGY

Developmental and insecticide-resistant insights from the de novo assembled transcriptome of the diamondback moth, Plutella xylostella

(2012) Weiyi He et al.   GENOMICS

Profiling the metatranscriptome of the protistan community in Coptotermes formosanus with emphasis on the lignocellulolytic system

(2012) Lei Xie et al.   GENOMICS

Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta

(2012) Xiufeng Zhang et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Carbohydrate-active enzymes revealed in Coptotermes formosanus (Isoptera: Rhinotermitidae) transcriptome

(2012) D. Zhang et al.   INSECT MOLECULAR BIOLOGY

Putative Chemosensory Receptors of the Codling Moth, Cydia pomonella, Identified by Antennal Transcriptome Analysis

(2012) Jonas M. Bengtsson et al.   PLoS One

High Through-Put Sequencing of the Parhyale hawaiensis mRNAs and microRNAs to Aid Comparative Developmental Studies

(2012) Martin J. Blythe et al.   PLoS One

Function, Developmental Genetics, and Fitness Consequences of a Sexually Antagonistic Trait

(2012) A. Khila et al.   SCIENCE

Non-transgenic genome modifications in a hemimetabolous insect using zinc-finger and TAL effector nucleases

(2012) Takahito Watanabe et al.   Nature Communications

De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis

(2011) Victor Zeng et al.   BMC GENOMICS

Transcriptome analysis and comparison reveal divergence between two invasive whitefly cryptic species

(2011) Xiao-Wei Wang et al.   BMC GENOMICS

The maternal and early embryonic transcriptome of the milkweed bug Oncopeltus fasciatus

(2011) Ben Ewen-Campen et al.   BMC GENOMICS

The Monarch Butterfly Genome Yields Insights into Long-Distance Migration

(2011) Shuai Zhan et al.   CELL

A versatile strategy for gene trapping and trap conversion in emerging model organisms

(2011) Z. Kontarakis et al.   DEVELOPMENT

Transcriptomic analysis of the housefly (Musca domestica) larva using massively parallel pyrosequencing

(2011) Fengsong Liu et al.   MOLECULAR BIOLOGY REPORTS

VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics

(2011) K. Megy et al.   NUCLEIC ACIDS RESEARCH

FlyBase 101 - the basics of navigating FlyBase

(2011) P. McQuilton et al.   NUCLEIC ACIDS RESEARCH

Molecular diversity of the telson and venom components from Pandinus cavimanus (Scorpionidae Latreille 1802): Transcriptome, venomics and function

(2011) Elia Diego-García et al.   PROTEOMICS

Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim

(2010) S. Balzer et al.   BIOINFORMATICS

Comparing de novo assemblers for 454 transcriptome data

(2010) Sujai Kumar et al.   BMC GENOMICS

Imaging of Transgenic Cricket Embryos Reveals Cell Movements Consistent with a Syncytial Patterning Mechanism

(2010) Taro Nakamura et al.   CURRENT BIOLOGY

A prominent requirement for single-minded and the ventral midline in patterning the dorsoventral axis of the crustacean Parhyale hawaiensis

(2010) M. A. Vargas-Vila et al.   DEVELOPMENT

RNAi analysis of nubbin embryonic functions in a hemimetabolous insect, Oncopeltus fasciatus

(2010) Steven Hrycaj et al.   EVOLUTION & DEVELOPMENT

Optimization of de novo transcriptome assembly from next-generation sequencing data

(2010) Y. Surget-Groba et al.   GENOME RESEARCH

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

(2010) Jerome C. Regier et al.   NATURE

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

De Novo Analysis of Transcriptome Dynamics in the Migratory Locust during the Development of Phase Traits

(2010) Shuang Chen et al.   PLoS One

Genome Sequence of the Pea Aphid Acyrthosiphon pisum

(2010)   PLOS BIOLOGY

De novo transcriptome assembly with ABySS

(2009) I. Birol et al.   BIOINFORMATICS

Next generation transcriptomes for next generation genomes using est2assembly

(2009) Alexie Papanicolaou et al.   BMC BIOINFORMATICS

Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species

(2009) Diana Bellin et al.   BMC GENOMICS

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

Diverging functions of Scr between embryonic and post-embryonic development in a hemimetabolous insect, Oncopeltus fasciatus

(2009) John Chesebro et al.   DEVELOPMENTAL BIOLOGY

Systemic RNA interference for the study of learning and memory in an insect

(2009) Toshifumi Takahashi et al.   JOURNAL OF NEUROSCIENCE METHODS

Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean

(2009) A. Pavlopoulos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology

(2009) D. M. Liubicich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Germ cells in the crustacean Parhyale hawaiensis depend on Vasa protein for their maintenance but not for their formation

(2008) Günes Özhan-Kizil et al.   DEVELOPMENTAL BIOLOGY

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

The genome of the model beetle and pest Tribolium castaneum

(2008) Stephen Richards et al.   NATURE

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH