Characterization of the E. coli proteome and its modifications during growth and ethanol stress

Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources

(2014) Gene-Wei Li et al.   CELL

Absolute Proteome and Phosphoproteome Dynamics during the Cell Cycle ofSchizosaccharomyces pombe(Fission Yeast)

(2014) Alejandro Carpy et al.   MOLECULAR & CELLULAR PROTEOMICS

What is the total number of protein molecules per cell volume? A call to rethink some published values

(2013) Ron Milo   BIOESSAYS

Global Dynamics of the Escherichia coli Proteome and Phosphoproteome During Growth in Minimal Medium

(2013) Nelson C. Soares et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative phosphoproteomic profiling of human non-small cell lung cancer tumors

(2013) Devin K. Schweppe et al.   Journal of Proteomics

Integrative “Omics”-Approach Discovers Dynamic and Regulatory Features of Bacterial Stress Responses

(2013) Bork A. Berghoff et al.   PLoS Genetics

First Insights into the Unexplored Two-Component System YehU/YehT in Escherichia coli

(2012) T. Kraxenberger et al.   JOURNAL OF BACTERIOLOGY

Genome-scale identification and characterization of ethanol tolerance genes in Escherichia coli

(2012) Lauren B.A. Woodruff et al.   METABOLIC ENGINEERING

Quantification of theN-glycosylated Secretome by Super-SILAC During Breast Cancer Progression and in Human Blood Samples

(2012) Paul J. Boersema et al.   MOLECULAR & CELLULAR PROTEOMICS

Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins

(2012) Tamar Geiger et al.   MOLECULAR & CELLULAR PROTEOMICS

Super-SILAC Allows Classification of Diffuse Large B-cell Lymphoma Subtypes by Their Protein Expression Profiles

(2012) Sally J. Deeb et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantitative proteomics of primary tumors with varying metastatic capabilities using stable isotope-labeled proteins of multiple histogenic origins

(2012) Rikke Raaen Lund et al.   PROTEOMICS

Role of Alcohols in Growth, Lipid Composition, and Membrane Fluidity of Yeasts, Bacteria, and Archaea

(2011) Sarah Huffer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Functional Genomic Study of Exogenous n-Butanol Stress in Escherichia coli

(2010) B. J. Rutherford et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) Applied to Quantitative Proteomics ofBacillus subtilis

(2010) Boumediene Soufi et al.   JOURNAL OF PROTEOME RESEARCH

Super-SILAC mix for quantitative proteomics of human tumor tissue

(2010) Tamar Geiger et al.   NATURE METHODS

Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis

(2010) J. V. Olsen et al.   Science Signaling

Escherichia coli Unsaturated Fatty Acid Synthesis

(2009) Youjun Feng et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Peptide separation with immobilized pI strips is an attractive alternative to in-gel protein digestion for proteome analysis

(2008) Nina C. Hubner et al.   PROTEOMICS