Microbial diversity and activity in the Nematostella vectensis holobiont: insights from 16S rRNA gene sequencing, isolate genomes, and a pilot-scale survey of gene expression

Host/Microbe Interactions Revealed Through “Omics” in the Symbiosis Between the Hawaiian Bobtail Squid Euprymna scolopes and the Bioluminescent Bacterium Vibrio fischeri

(2016) Bethany A. Rader et al.   BIOLOGICAL BULLETIN

Natural volcanic CO2 seeps reveal future trajectories for host–microbial associations in corals and sponges

(2014) Kathleen M Morrow et al.   ISME Journal

Secondary metabolite gene expression and interplay of bacterial functions in a tropical freshwater cyanobacterial bloom

(2014) Kevin Penn et al.   ISME Journal

Cnidarian-Microbe Interactions and the Origin of Innate Immunity in Metazoans

(2013) Thomas C.G. Bosch   Annual Review of Microbiology

Genome Sequence Analysis Indicates that the Model Eukaryote Nematostella vectensis Harbors Bacterial Consorts

(2013) Irena I. Artamonova et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Microbiome of the Red Sea Coral Stylophora pistillata Is Dominated by Tissue-Associated Endozoicomonas Bacteria

(2013) Till Bayer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An assessment of microbial communities associated with surface mining-disturbed overburden

(2013) Dominique M. Poncelet et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Description of Endozoicomonas euniceicola sp. nov. and Endozoicomonas gorgoniicola sp. nov., bacteria isolated from the octocorals Eunicea fusca and Plexaura sp., and an emended description of the genus Endozoicomonas

(2013) R. E. Pike et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Bacterial colonization of Hydra hatchlings follows a robust temporal pattern

(2013) Sören Franzenburg et al.   ISME Journal

Physiological and developmental responses to temperature by the sea anemone Nematostella vectensis

(2013) AM Reitzel et al.   MARINE ECOLOGY PROGRESS SERIES

Collecting, rearing, spawning and inducing regeneration of the starlet sea anemone, Nematostella vectensis

(2013) Derek J Stefanik et al.   Nature Protocols

Global Transcriptional Responses of the Toxic Cyanobacterium, Microcystis aeruginosa, to Nitrogen Stress, Phosphorus Stress, and Growth on Organic Matter

(2013) Matthew J. Harke et al.   PLoS One

Distinct antimicrobial peptide expression determines host species-specific bacterial associations

(2013) S. Franzenburg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polyester synthesis genes associated with stress resistance are involved in an insect-bacterium symbiosis

(2013) J. K. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Limnobacter spp. as newly detected phenol-degraders among Baltic Sea surface water bacteria characterised by comparative analysis of catabolic genes

(2013) Eve Vedler et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Corals Form Characteristic Associations with Symbiotic Nitrogen-Fixing Bacteria

(2012) Kimberley A. Lema et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial Associates of Two Caribbean Coral Species Reveal Species-Specific Distribution and Geographic Variability

(2012) Kathleen M. Morrow et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Biogeography of Rhizobium radiobacter and distribution of associated temperate phages in deep subseafloor sediments

(2012) Tim Engelhardt et al.   ISME Journal

Bacteria of the genus Endozoicomonas dominate the microbiome of the Mediterranean gorgonian coral Eunicella cavolini

(2012) T Bayer et al.   MARINE ECOLOGY PROGRESS SERIES

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations

(2012) O. X. Cordero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Establishing a model organism: A report from the first annual Nematostella meeting

(2011) Adam M. Reitzel et al.   BIOESSAYS

Black reefs: iron-induced phase shifts on coral reefs

(2011) Linda Wegley Kelly et al.   ISME Journal

Depleted dissolved organic carbon and distinct bacterial communities in the water column of a rapid-flushing coral reef ecosystem

(2011) Craig E Nelson et al.   ISME Journal

Complete Genome of Pseudomonas mendocina NK-01, Which Synthesizes Medium-Chain-Length Polyhydroxyalkanoates and Alginate Oligosaccharides

(2011) W. Guo et al.   JOURNAL OF BACTERIOLOGY

VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors

(2011) L. Chen et al.   NUCLEIC ACIDS RESEARCH

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

(2011) S. Powell et al.   NUCLEIC ACIDS RESEARCH

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Isolation and diversity analysis of heterotrophic bacteria associated with sea anemones

(2010) Zongjun Du et al.   ACTA OCEANOLOGICA SINICA

The major outer membrane protein OmpU of Vibrio splendidus contributes to host antimicrobial peptide resistance and is required for virulence in the oyster Crassostrea gigas

(2010) Marylise Duperthuy et al.   ENVIRONMENTAL MICROBIOLOGY

Coral-Associated Bacterial Assemblages: Current Knowledge and the Potential for Climate-Driven Impacts

(2010) Morgan E. Mouchka et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Limnobacter litoralis sp. nov., a thiosulfate-oxidizing, heterotrophic bacterium isolated from a volcanic deposit, and emended description of the genus Limnobacter

(2010) H. Lu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

(2010) Frank J Stewart et al.   ISME Journal

Validation of two ribosomal RNA removal methods for microbial metatranscriptomics

(2010) Shaomei He et al.   NATURE METHODS

Threatened Corals Provide Underexplored Microbial Habitats

(2010) Shinichi Sunagawa et al.   PLoS One

Unlocking Short Read Sequencing for Metagenomics

(2010) Sébastien Rodrigue et al.   PLoS One

Ecosystem-specific selection pressures revealed through comparative population genomics

(2010) M. L. Coleman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In an early branching metazoan, bacterial colonization of the embryo is controlled by maternal antimicrobial peptides

(2010) S. Fraune et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities

(2010) Howard Ochman et al.   PLOS BIOLOGY

Coral-Associated Bacteria and Their Role in the Biogeochemical Cycling of Sulfur

(2009) J.-B. Raina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Culture-Independent Characterization of Bacterial Communities Associated with the Cold-Water Coral Lophelia pertusa in the Northeastern Gulf of Mexico

(2009) C. A. Kellogg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pseudomonas oleovorans subsp. lubricantis subsp. nov., and Reclassification of Pseudomonas pseudoalcaligenes ATCC 17440T as Later Synonym of Pseudomonas oleovorans ATCC 8062T

(2009) Ratul Saha et al.   CURRENT MICROBIOLOGY

Microbial functional structure ofMontastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies

(2009) Nikole E. Kimes et al.   ENVIRONMENTAL MICROBIOLOGY

Endozoicomonas montiporae sp. nov., isolated from the encrusting pore coral Montipora aequituberculata

(2009) C. S. Yang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

(2009) Shinichi Sunagawa et al.   ISME Journal

Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla

(2009) M. A. Mahowald et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A muscle-specific transgenic reporter line of the sea anemone, Nematostella vectensis

(2009) E. Renfer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial disease and the coral holobiont

(2009) David G. Bourne et al.   TRENDS IN MICROBIOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Symbiotic diversity in marine animals: the art of harnessing chemosynthesis

(2008) Nicole Dubilier et al.   NATURE REVIEWS MICROBIOLOGY

Enzymes of the shikimic acid pathway encoded in the genome of a basal metazoan, Nematostella vectensis, have microbial origins

(2008) A. Starcevic et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE

Innate Immune Homeostasis by the Homeobox Gene Caudal and Commensal-Gut Mutualism in Drosophila

(2008) J.-H. Ryu et al.   SCIENCE