4.1 Article

Better Catch Curves: Incorporating Age-Specific Natural Mortality and Logistic Selectivity

期刊

出版社

WILEY
DOI: 10.1080/00028487.2011.557016

关键词

-

资金

  1. National Marine Fisheries Service's (NMFS) Southeast Fisheries Science Center
  2. University of Washington
  3. NMFS [NA09OAR4170120]

向作者/读者索取更多资源

Catch-curve analysis is one of the simplest methods for stock assessment and is widely applied in data-poor fisheries. Conventional catch-curve methods rely on the strong assumptions of constant fishing and natural mortality rates above some fully selected age that is usually estimated by visually inspecting a plot of catch at age. Here, we evaluate the performance of three catch-curve methods that relax or modify these assumptions by (1) estimating logistic selectivity parameters, (2) assuming Lorenzen-form natural mortality (natural mortality that decreases with weight), and (3) using both methods simultaneously. We used simulation modeling and decision tables to compare estimates of fishing mortality from four catch-curve methods, including the conventional method, across a variety of observable and unobservable data characteristics. We then applied the methods to catch-at-age data for Atlantic menhaden Brevoortia tyrannus from the U. S. South Atlantic fishery management region and compared the resulting estimates with published estimates of fishing mortality (F). In our simulation modeling, catch curves that estimated logistic selectivity parameters performed better than those derived by the conventional method when logistic selectivity was present. There was generally little difference in performance between estimates assuming constant natural mortality and those assuming Lorenzen natural mortality. The improvements from estimating selectivity parameters were particularly pronounced when the sample sizes for catch-at-age data were large: in those instances, estimating selectivity improved the estimation accuracy for F by nearly 20%. In our example involving Atlantic menhaden, estimates of F assuming logistic selectivity were most similar to those of published stock assessments, which had previously estimated logistic selectivity at age. We recommend our logistic-selectivity catch curve when selectivity is likely to be logistic because it improves accuracy at only a very small cost in terms of computational complexity.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.1
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Fisheries

A spatial statistical approach for identifying population structuring of marine fish species: European sprat as a case study

Martin Lindegren, Mikael van Deurs, Aurore Maureaud, James T. Thorson, Dorte Bekkevold

Summary: Many marine fish species have wide distribution, but failing to acknowledge distinct populations within these species may lead to overestimation of stock's harvest potential. This study developed a statistical approach to identify population boundaries for European sprat, revealing regional differences in abundance patterns and confirming genetic studies showing reproductive isolation between different regions. The statistical approach can complement genetic methods and guide spatial management efforts for sustainable exploitation under changing climate conditions.

ICES JOURNAL OF MARINE SCIENCE (2022)

Article Fisheries

Development and simulation testing for a new approach to density dependence in species distribution models

James T. Thorson

Summary: This study demonstrates the importance of density dependence in species distribution models and proposes several new approaches to address density dependence. They find that the impact of species abundance on habitats is spatiotemporally varied, and this relationship can be detected using SDMs.

ICES JOURNAL OF MARINE SCIENCE (2022)

Article Ecology

Titmice are a better indicator of bird density in Northern European than in Western European forests

Mira H. Kajanus, Jukka T. Forsman, Maximilian G. R. Vollstadt, Vincent Devictor, Merja Elo, Aleksi Lehikoinen, Mikko Monkkonen, James T. Thorson, Sami M. Kivela

Summary: Titmice can serve as indicators of bird density in Northern European forest bird communities, encouraging the use of titmice observations by even less-experienced observers in citizen science monitoring.

ECOLOGY AND EVOLUTION (2022)

Article Fisheries

Understanding transboundary stocks' availability by combining multiple fisheries-independent surveys and oceanographic conditions in spatiotemporal models

Cecilia A. O'Leary, Lukas B. DeFilippo, James T. Thorson, Stan Kotwicki, Gerald R. Hoff, Vladimir V. Kulik, James N. Ianelli, Andre E. Punt

Summary: As oceans warm, the distribution of groundfish species shifts, which can complicate management efforts. This study developed model-based biomass estimates for three Bering Sea groundfish species by combining data from the US and Russia. The results show that groundfish densities have shifted northward and high-density areas now span across the international border.

ICES JOURNAL OF MARINE SCIENCE (2022)

Article Fisheries

Combining scientific survey and commercial catch data to map fish distribution

Baptiste Alglave, Etienne Rivot, Marie-Pierre Etienne, Mathieu Woillez, James T. Thorson, Youen Vermard

Summary: Developing Species Distribution Models (SDM) for marine exploited species is a major challenge in fisheries ecology. Classical modelling approaches typically rely on fish research survey data. Spatial monitoring of commercial data can provide an additional extensive data source to inform fish spatial distribution. We propose a spatial hierarchical framework integrating both data sources while accounting for preferential sampling (PS) of commercial data. The framework is successfully applied to three demersal species in the Bay of Biscay.

ICES JOURNAL OF MARINE SCIENCE (2022)

Article Fisheries

The estimated impact of changes to otolith field-sampling and ageing effort on stock assessment inputs, outputs, and catch advice

Matthew R. Siskey, Andre E. Punt, Peter-John F. Hulson, Meaghan D. Bryan, James N. Ianelli, James T. Thorson

Summary: This study developed a framework for evaluating the impact of survey sampling designs on stock assessments and found that decreasing the number of tows sampled led to an increase in the uncertainty of the overfishing limit (OFL). The study also found that reducing the number of otoliths per tow had a smaller impact on OFL uncertainty. Applying this framework to all monitored stocks is important to identify which stocks benefit the most from increased sampling or have the least impact on OFL uncertainty with reduced sampling.

CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES (2023)

Article Fisheries

Incorporating distribution shifts and spatio-temporal variation when estimating weight-at-age for stock assessments: a case study involving the Bering Sea pollock (Gadus chalcogrammus)

Julia Indivero, Timothy E. Essington, James N. Ianelli, James T. Thorson

Summary: Environmental conditions can lead to variability in growth and distribution processes, but current stock assessment methods often neglect these patterns. This study used data on walleye pollock in the Bering Sea to demonstrate a feasible approach for incorporating spatially unbalanced size-at-age samples into stock assessments. The analysis revealed extensive variation in size-at-age at fine spatial scales, with year-to-year differences in spatial patterning. Integrating spatiotemporally explicit size-at-age processes improved stock assessment consistency and provided insights into demographic processes. This approach could enhance stock-assessment forecasts under climate change.

ICES JOURNAL OF MARINE SCIENCE (2023)

Article Ecology

Do large-scale associations in birds imply biotic interactions or environmental filtering?

Merja Elo, Mira H. Kajanus, Jere Tolvanen, Vincent Devictor, Jukka T. Forsman, Aleksi Lehikoinen, Mikko Monkkonen, James T. Thorson, Maximilian G. R. Vollstadt, Sami M. Kivela

Summary: This study investigates the impacts of environmental filtering and biotic interactions on spatial and temporal associations among bird species using a novel hypothesis-testing framework based on joint dynamic species distribution models and functional trait similarity. The findings suggest that the aggregation of species is mainly driven by environmental filtering and heterospecific attraction, with no evidence of competition.

JOURNAL OF BIOGEOGRAPHY (2023)

Article Fisheries

Spatially varying catchability for integrating research survey data with other data sources: case studies involving observer samples, industry-cooperative surveys, and predators as samplers

Arnaud Gruss, James T. Thorson, Owen F. Anderson, Richard L. O'Driscoll, Madison Heller-Shipley, Scott Goodman

Summary: This study developed a spatio-temporal modelling framework that integrates research survey data and other data sources. It demonstrated the effectiveness of this framework through two case studies.

CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES (2023)

Article Biodiversity Conservation

Spatially varying coefficients can improve parsimony and descriptive power for species distribution models

James T. Thorson, Cheryl L. Barnes, Sarah T. Friedman, Janelle L. Morano, Margaret C. Siple

Summary: Species distribution models (SDMs) are commonly used to analyze the relationship between species occurrence/density and environmental conditions, often including a spatially correlated variable. Spatially varying coefficients (SVCs) in SDMs have received less attention but have the potential to improve interpretability and descriptive power. This article reviews the benefits of using SVCs in ecological contexts such as ecological teleconnections, density-dependent habitat selection, spatially varying detectability, and interactions with unmeasured covariates. Detailed examples using the vector autoregressive spatio-temporal (VAST) model illustrate the advantages of SVCs in analyzing decadal trends, community assembly, and population dynamics. SVCs extend the capabilities of SDMs and enhance our understanding of ecological processes.

ECOGRAPHY (2023)

Article Ecology

Identifying direct and indirect associations among traits by merging phylogenetic comparative methods and structural equation modelsKey-words

James T. T. Thorson, Aurore A. A. Maureaud, Romain Frelat, Bastien Merigot, Jennifer S. S. Bigman, Sarah T. T. Friedman, Maria Lourdes D. Palomares, Malin L. L. Pinsky, Samantha A. A. Price, Peter Wainwright

Summary: This study extends previous methods by using structural equation models and associations among categorical traits to achieve mixed-trait imputation. Results show that a one-degree increase in habitat temperature is associated with an average 3.5% increase in natural mortality and a 3.0% decrease in fecundity.

METHODS IN ECOLOGY AND EVOLUTION (2023)

Article Fisheries

Integrating survey and observer data improves the predictions of New Zealand spatio-temporal models

A. Gruess, A. R. Charsley, J. T. Thorson, O. F. Anderson, R. L. O'Driscoll, B. Wood, O. N. Breivik, C. A. O'Leary

Summary: Species distribution models often require multiple data sources to achieve their objectives. In this study, we developed a spatio-temporal modelling framework that integrated research survey data and observer data from fishing vessels, while accounting for physical barriers. Applying this framework to deepwater fisheries in New Zealand, we found that using both observer-only data and integrated data is essential for mapping fish biomass at a large scale and interpolating local biomass indices in years without survey data. We also demonstrated the importance of considering the reliability of interannual variability when choosing between models relying on integrated data or survey-only data for a given geographic area. Moreover, our simulation experiment revealed that the predictions of our spatio-temporal models were not significantly affected by the presence of physical barriers.

ICES JOURNAL OF MARINE SCIENCE (2023)

Article Fisheries

Spatio-temporal species distribution models reveal dynamic indicators for ecosystem-based fisheries management

J. J. Badger, S. Large, J. T. Thorson

Summary: Many economic sectors rely on marine ecosystem services, and integrated ecosystem assessments (IEAs) are necessary for holistic management and sustainable use. This study demonstrates the utility of spatially and temporally explicit ecological indicators in assessing ecosystem performance and identifying localized processes. The examples highlight the benefits of spatio-temporal methods for integrated ecosystem analysis in the northeast US Shelf Ecosystem.

ICES JOURNAL OF MARINE SCIENCE (2023)

Article Fisheries

Simulating benefits, costs and trade-offs of spatial management in marine social-ecological systems

Daniel Ovando, Darcy Bradley, Echelle Burns, Lennon Thomas, James Thorson

Summary: Designing effective spatial management strategies for marine ecosystems is challenging due to their complexity and uncertainties. This paper presents a modelling framework called marlin, which can simulate the bio-economic dynamics of marine systems efficiently. The framework can be used for both management and research purposes. The study demonstrates the capabilities of marlin through two case studies on marine protected areas (MPAs) and their impacts on conservation and food production. It shows how the framework can assess the distributional outcomes and climate resilience of different MPA design strategies and fishing fleets. The paper highlights the importance of intermediate complexity simulation in predicting and managing trade-offs among conservation, fisheries yields, and distributional outcomes of management policies affected by spatial bio-economic dynamics.

FISH AND FISHERIES (2023)

Article Fisheries

Trees for fishes: The neglected role for phylogenetic comparative methods in fisheries science

James T. Thorson

Summary: Phylogenetic comparative methods (PCM) and phylogenetic structural equation models (PSEM) can replace linear models and improve performance in fisheries meta-analyses, but they are rarely applied in fisheries science.

FISH AND FISHERIES (2023)

暂无数据