Caveats with estimating natural mortality rates in stock assessment models using age aggregated catch data and abundance indices

Implementing two-dimensional autocorrelation in either survival or natural mortality improves a state-space assessment model for Southern New England-Mid Atlantic yellowtail flounder

(2021) Brian C. Stock et al.   FISHERIES RESEARCH

Improving inference for nonlinear state‐space models of animal population dynamics given biased sequential life stage data

(2020) Leo Polansky et al.   BIOMETRICS

Size‐ and stage‐dependence in cause‐specific mortality of migratory brown trout

(2020) Chloé R. Nater et al.   JOURNAL OF ANIMAL ECOLOGY

The specification of the data model part in the SAM model matters

(2020) M. Aldrin et al.   FISHERIES RESEARCH

Consequences of error in natural mortality and its estimation in stock assessment models

(2020) André E. Punt et al.   FISHERIES RESEARCH

Temporally varying natural mortality: Sensitivity of a virtual population analysis and an exploration of alternatives

(2017) Shanae D. Allen et al.   FISHERIES RESEARCH

Parameter redundancy in discrete state-space and integrated models

(2016) Diana J. Cole et al.   BIOMETRICAL JOURNAL

A state-space stock assessment model for northern cod, including under-reported catches and variable natural mortality rates

(2016) Noel G. Cadigan   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

TMB: Automatic Differentiation and Laplace Approximation

(2016) Kasper Kristensen et al.   Journal of Statistical Software

Estimation of time-varying selectivity in stock assessments using state-space models

(2014) Anders Nielsen et al.   FISHERIES RESEARCH

Estimating natural mortality within a fisheries stock assessment model: An evaluation using simulation analysis based on twelve stock assessments

(2011) Hui-Hua Lee et al.   FISHERIES RESEARCH

Estimability and Likelihood Inference for Generalized Linear Mixed Models Using Data Cloning

(2011) Subhash R. Lele et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

A Note on Determining Parameter Redundancy in Age-Dependent Tag Return Models for Estimating Fishing Mortality, Natural Mortality and Selectivity

(2010) Diana J. Cole et al.   JOURNAL OF AGRICULTURAL BIOLOGICAL AND ENVIRONMENTAL STATISTICS

Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood

(2009) A. Raue et al.   BIOINFORMATICS