Comparative Study of Regulatory Circuits in Two Sea Urchin Species Reveals Tight Control of Timing and High Conservation of Expression Dynamics

A comprehensive survey ofwntandfrizzledexpression in the sea urchinParacentrotuslividus

(2014) Nicolas Robert et al.   GENESIS

Encoding regulatory state boundaries in the pregastrular oral ectoderm of the sea urchin embryo

(2014) E. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Robustness and Evolvability of Transcription Factor Binding Sites

(2014) J. L. Payne et al.   SCIENCE

Logarithmic and Power Law Input-Output Relations in Sensory Systems with Fold-Change Detection

(2014) Miri Adler et al.   PLoS Computational Biology

Drosophila Embryogenesis Scales Uniformly across Temperature in Developmentally Diverse Species

(2014) Steven G. Kuntz et al.   PLoS Genetics

Buffered Qualitative Stability explains the robustness and evolvability of transcriptional networks

(2014) Luca Albergante et al.   eLife

New regulatory circuit controlling spatial and temporal gene expression in the sea urchin embryo oral ectoderm GRN

(2013) Enhu Li et al.   DEVELOPMENTAL BIOLOGY

Promoter decoding of transcription factor dynamics involves a trade-off between noise and control of gene expression

(2013) A. S. Hansen et al.   Molecular Systems Biology

Gene regulatory network for neurogenesis in a sea star embryo connects broad neural specification and localized patterning

(2013) K. A. Yankura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Impact of Gene Expression Variation on the Robustness and Evolvability of a Developmental Gene Regulatory Network

(2013) David A. Garfield et al.   PLOS BIOLOGY

Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitors: Current Status and Future Perspectives in the Development of Novel Irreversible Inhibitors for the Treatment of Mutant Non-small Cell Lung Cancer

(2012) Elena Galvani et al.   CURRENT PHARMACEUTICAL DESIGN

Direct and indirect control of oral ectoderm regulatory gene expression by Nodal signaling in the sea urchin embryo

(2012) Enhu Li et al.   DEVELOPMENTAL BIOLOGY

A comprehensive analysis of Delta signaling in pre-gastrular sea urchin embryos

(2012) Stefan C. Materna et al.   DEVELOPMENTAL BIOLOGY

Cis-regulatory logic driving glial cells missing: Self-sustaining circuitry in later embryogenesis

(2012) Andrew Ransick et al.   DEVELOPMENTAL BIOLOGY

Gene regulatory control in the sea urchin aboral ectoderm: Spatial initiation, signaling inputs, and cell fate lockdown

(2012) Smadar Ben-Tabou de-Leon et al.   DEVELOPMENTAL BIOLOGY

Diversification of oral and aboral mesodermal regulatory states in pregastrular sea urchin embryos

(2012) Stefan C. Materna et al.   DEVELOPMENTAL BIOLOGY

Developmental Milestones Punctuate Gene Expression in the Caenorhabditis Embryo

(2012) Michal Levin et al.   DEVELOPMENTAL CELL

Genetics of gene expression responses to temperature stress in a sea urchin gene network

(2012) DANIEL E. RUNCIE et al.   MOLECULAR ECOLOGY

Noise Propagation in Gene Regulation Networks Involving Interlinked Positive and Negative Feedback Loops

(2012) Hui Zhang et al.   PLoS One

Development of an embryonic skeletogenic mesenchyme lineage in a sea cucumber reveals the trajectory of change for the evolution of novel structures in echinoderms

(2012) Brenna S McCauley et al.   EvoDevo

Evolution of Gene Regulatory Networks Controlling Body Plan Development

(2011) Isabelle S. Peter et al.   CELL

Precise cis-regulatory control of spatial and temporal expression of the alx-1 gene in the skeletogenic lineage of s. purpuratus

(2011) Sagar Damle et al.   DEVELOPMENTAL BIOLOGY

Mapping Gene Expression in Two Xenopus Species: Evolutionary Constraints and Developmental Flexibility

(2011) Itai Yanai et al.   DEVELOPMENTAL CELL

A gene regulatory network controlling the embryonic specification of endoderm

(2011) Isabelle S. Peter et al.   NATURE

How Great Wings Can Look Alike

(2011) S. B. Carroll   SCIENCE

Perturbation analysis analyzed—mathematical modeling of intact and perturbed gene regulatory circuits for animal development

(2010) Smadar Ben-Tabou de-Leon   DEVELOPMENTAL BIOLOGY

Genomic programs for endoderm specification in sea urchin embryos

(2010) Isabelle Peter et al.   DEVELOPMENTAL BIOLOGY

High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development

(2010) Stefan C. Materna et al.   GENE EXPRESSION PATTERNS

Information processing at the foxa node of the sea urchin endomesoderm specification network

(2010) S. B.-T. de-Leon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fold-change detection and scalar symmetry of sensory input fields

(2010) O. Shoval et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancestral Regulatory Circuits Governing Ectoderm Patterning Downstream of Nodal and BMP2/4 Revealed by Gene Regulatory Network Analysis in an Echinoderm

(2010) Alexandra Saudemont et al.   PLoS Genetics

Evolution of gene regulatory network architectures: Examples of subcircuit conservation and plasticity between classes of echinoderms

(2009) Veronica F. Hinman et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Dynamics of Delta/Notch signaling on endomesoderm segregation in the sea urchin embryo

(2009) J. C. Croce et al.   DEVELOPMENT

Nodal and BMP2/4 pattern the mesoderm and endoderm during development of the sea urchin embryo

(2009) Véronique Duboc et al.   DEVELOPMENT

The gene regulatory network basis of the “community effect,” and analysis of a sea urchin embryo example

(2009) Hamid Bolouri et al.   DEVELOPMENTAL BIOLOGY

A conserved gene regulatory network subcircuit drives different developmental fates in the vegetal pole of highly divergent echinoderm embryos

(2009) Brenna S. McCauley et al.   DEVELOPMENTAL BIOLOGY

The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage

(2009) Isabelle S. Peter et al.   DEVELOPMENTAL BIOLOGY

Evidence that Fold-Change, and Not Absolute Level, of β-Catenin Dictates Wnt Signaling

(2009) Lea Goentoro et al.   MOLECULAR CELL

Deep homology and the origins of evolutionary novelty

(2009) Neil Shubin et al.   NATURE

Patterning of the Dorsal-Ventral Axis in Echinoderms: Insights into the Evolution of the BMP-Chordin Signaling Network

(2009) François Lapraz et al.   PLOS BIOLOGY

Modeling the dynamics of transcriptional gene regulatory networks for animal development

(2008) Smadar Ben-Tabou de-Leon et al.   DEVELOPMENTAL BIOLOGY

A Wnt-FoxQ2-Nodal Pathway Links Primary and Secondary Axis Specification in Sea Urchin Embryos

(2008) Shunsuke Yaguchi et al.   DEVELOPMENTAL CELL

Noise Propagation and Signaling Sensitivity in Biological Networks: A Role for Positive Feedback

(2008) Gil Hornung et al.   PLoS Computational Biology

Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo

(2008) J. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global regulatory logic for specification of an embryonic cell lineage

(2008) P. Oliveri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A spatially dynamic cohort of regulatory genes in the endomesodermal gene network of the sea urchin embryo

(2007) Joel Smith et al.   DEVELOPMENTAL BIOLOGY