The Impact of Gene Expression Variation on the Robustness and Evolvability of a Developmental Gene Regulatory Network

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

Comparison of endogenous and overexpressed MyoD shows enhanced binding of physiologically bound sites

(2013) Zizhen Yao et al.   Skeletal Muscle

Foxp3 Exploits a Pre-Existent Enhancer Landscape for Regulatory T Cell Lineage Specification

(2012) Robert M. Samstein et al.   CELL

Population genetics of cis-regulatory sequences that operate during embryonic development in the sea urchin Strongylocentrotus purpuratus

(2012) David Garfield et al.   EVOLUTION & DEVELOPMENT

Genetics of gene expression responses to temperature stress in a sea urchin gene network

(2012) DANIEL E. RUNCIE et al.   MOLECULAR ECOLOGY

Genome-wide protein–DNA binding dynamics suggest a molecular clutch for transcription factor function

(2012) Colin R. Lickwar et al.   NATURE

Transcription factors: from enhancer binding to developmental control

(2012) François Spitz et al.   NATURE REVIEWS GENETICS

The role of robustness in phenotypic adaptation and innovation

(2012) A. Wagner   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Sequential Signaling Crosstalk Regulates Endomesoderm Segregation in Sea Urchin Embryos

(2012) A. J. Sethi et al.   SCIENCE

CO2 induced seawater acidification impacts sea urchin larval development II: Gene expression patterns in pluteus larvae

(2011) M. Stumpp et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Regulative deployment of the skeletogenic gene regulatory network during sea urchin development

(2011) T. Sharma et al.   DEVELOPMENT

The control of foxN2/3 expression in sea urchin embryos and its function in the skeletogenic gene regulatory network

(2011) H. K. Rho et al.   DEVELOPMENT

Wnt6 activates endoderm in the sea urchin gene regulatory network

(2011) J. Croce et al.   DEVELOPMENT

Early development and molecular plasticity in the Mediterranean sea urchin Paracentrotus lividus exposed to CO2-driven acidification

(2011) S. Martin et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Morphological evolution caused by many subtle-effect substitutions in regulatory DNA

(2011) Nicolás Frankel et al.   NATURE

Identification of two genes causing reinforcement in the Texas wildflower Phlox drummondii

(2011) Robin Hopkins et al.   NATURE

Genome-wide polymorphisms show unexpected targets of natural selection

(2011) M. H. Pespeni et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

optix Drives the Repeated Convergent Evolution of Butterfly Wing Pattern Mimicry

(2011) R. D. Reed et al.   SCIENCE

Manganese Interferes with Calcium, Perturbs ERK Signaling, and Produces Embryos with No Skeleton

(2011) Annalisa Pinsino et al.   TOXICOLOGICAL SCIENCES

Pioneer factors: directing transcriptional regulators within the chromatin environment

(2011) Luca Magnani et al.   TRENDS IN GENETICS

Cis-regulatory analysis of the sea urchin pigment cell gene polyketide synthase

(2010) Cristina Calestani et al.   DEVELOPMENTAL BIOLOGY

Abundant genetic variation in transcript level during early Drosophila development

(2010) Sergey V. Nuzhdin et al.   EVOLUTION & DEVELOPMENT

Relative importance of parental diet versus larval nutrition on development and phenotypic plasticity ofPseudechinus huttonilarvae (Echinodermata: Echinoidea)

(2010) Hadi Poorbagher et al.   Marine Biology Research

Gene expression divergence recapitulates the developmental hourglass model

(2010) Alex T. Kalinka et al.   NATURE

Mutational robustness can facilitate adaptation

(2010) Jeremy A. Draghi et al.   NATURE

Phosphoproteomes of Strongylocentrotus purpuratus shell and tooth matrix: identification of a major acidic sea urchin tooth phosphoprotein, phosphodontin

(2010) Karlheinz Mann et al.   Proteome Science

Hsp90 and Environmental Stress Transform the Adaptive Value of Natural Genetic Variation

(2010) D. F. Jarosz et al.   SCIENCE

Robustness and Evolvability

(2010) Joanna Masel et al.   TRENDS IN GENETICS

Restriction Site Tiling Analysis: accurate discovery and quantitative genotyping of genome-wide polymorphisms using nucleotide arrays

(2010) Melissa H Pespeni et al.   GENOME BIOLOGY

The sea urchin animal pole domain is a Six3-dependent neurogenic patterning center

(2009) Z. Wei et al.   DEVELOPMENT

A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo

(2009) Yi-Hsien Su et al.   DEVELOPMENTAL BIOLOGY

The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage

(2009) Isabelle S. Peter et al.   DEVELOPMENTAL BIOLOGY

Morphometric integration and modularity in configurations of landmarks: tools for evaluating a priori hypotheses

(2009) Christian Peter Klingenberg   EVOLUTION & DEVELOPMENT

The Evolution of Control and Distribution of Adaptive Mutations in a Metabolic Pathway

(2009) K. M. Wright et al.   GENETICS

Stepwise Modification of a Modular Enhancer Underlies Adaptation in a Drosophila Population

(2009) M. Rebeiz et al.   SCIENCE

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE

Robustness: mechanisms and consequences

(2009) Joanna Masel et al.   TRENDS IN GENETICS

Gene Regulatory Network Interactions in Sea Urchin Endomesoderm Induction

(2009) Aditya J Sethi et al.   PLOS BIOLOGY

The Evolution of Gene Regulation Underlies a Morphological Difference between Two Drosophila Sister Species

(2008) Sangyun Jeong et al.   CELL

Evolutionary analysis of the cis-regulatory region of the spicule matrix gene SM50 in strongylocentrotid sea urchins

(2008) Jenna Walters et al.   DEVELOPMENTAL BIOLOGY

SpBase: the sea urchin genome database and web site

(2008) R. A. Cameron et al.   NUCLEIC ACIDS RESEARCH

Global regulatory logic for specification of an embryonic cell lineage

(2008) P. Oliveri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA