Large Numbers of Novel miRNAs Originate from DNA Transposons and Are Coincident with a Large Species Radiation in Bats

Identification of microRNA-Like RNAs in the Filamentous Fungus Trichoderma reesei by Solexa Sequencing

(2013) Kang Kang et al.   PLoS One

Identification of MicroRNA-Like RNAs in Mycelial and Yeast Phases of the Thermal Dimorphic Fungus Penicillium marneffei

(2013) Susanna K. P. Lau et al.   PLoS Neglected Tropical Diseases

Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates

(2012) Jerzy Jurka et al.   Biology Direct

The novel MER transposon-derived miRNAs in human genome

(2012) Kung Ahn et al.   GENE

Survey Sequencing Reveals Elevated DNA Transposon Activity, Novel Elements, and Variation in Repetitive Landscapes among Vesper Bats

(2012) H. J. T. Pagan et al.   Genome Biology and Evolution

Functional validation of microRNA-target RNA interactions

(2012) S. Vasudevan   METHODS

The Diversity of Class II Transposable Elements in Mammalian Genomes Has Arisen from Ancestral Phylogenetic Splits during Ancient Waves of Proliferation through the Genome

(2012) E. H. B. Hellen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Human MicroRNAs Originated from Two Periods at Accelerated Rates in Mammalian Evolution

(2012) Hisakazu Iwama et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic Diversity of Neotropical Myotis (Chiroptera: Vespertilionidae) with an Emphasis on South American Species

(2012) Roxanne J. Larsen et al.   PLoS One

Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon

(2012) R. Mitra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transposable elements and viruses as factors in adaptation and evolution: an expansion and strengthening of the TE-Thrust hypothesis

(2012) Keith R. Oliver et al.   Ecology and Evolution

Horizontal transfers of Mariner transposons between mammals and insects

(2012) Sarah G Oliveira et al.   Mobile DNA

Families of transposable elements, population structure and the origin of species

(2011) Jerzy Jurka et al.   Biology Direct

The genome of the green anole lizard and a comparative analysis with birds and mammals

(2011) Jessica Alföldi et al.   NATURE

Ensembl 2012

(2011) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification

(2011) R. W. Meredith et al.   SCIENCE

Mobile DNA and the TE-Thrust hypothesis: supporting evidence from the primates

(2011) Keith R Oliver et al.   Mobile DNA

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

MapMi: automated mapping of microRNA loci

(2010) Jose Afonso Guerra-Assuncao et al.   BMC BIOINFORMATICS

The limited distribution of Helitrons to vesper bats supports horizontal transfer

(2010) Jainy Thomas et al.   GENE

The Evolution and Diversity of DNA Transposons in the Genome of the Lizard Anolis carolinensis

(2010) Peter A. Novick et al.   Genome Biology and Evolution

PiggyBac-ing on a Primate Genome: Novel Elements, Recent Activity and Horizontal Transfer

(2010) Heidi J. T. Pagan et al.   Genome Biology and Evolution

Identifying the confounding factors in resolving phylogenetic relationships in Vespertilionidae

(2010) Justin B. Lack et al.   JOURNAL OF MAMMALOGY

Tribal phylogenetic relationships within Vespertilioninae (Chiroptera: Vespertilionidae) based on mitochondrial and nuclear sequence data

(2010) Zachary P. Roehrs et al.   JOURNAL OF MAMMALOGY

A role for host–parasite interactions in the horizontal transfer of transposons across phyla

(2010) Clément Gilbert et al.   NATURE

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Transposable elements and an epigenetic basis for punctuated equilibria

(2009) David W. Zeh et al.   BIOESSAYS

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

Marsupial-specific microRNAs evolved from marsupial-specific transposable elements

(2009) Eric J. Devor et al.   GENE

Independent and parallel lateral transfer of DNA transposons in tetrapod genomes

(2009) Peter Novick et al.   GENE

5S rRNA-derived and tRNA-derived SINEs in fruit bats

(2009) Konstantin P. Gogolevsky et al.   GENOMICS

The Evolutionary Dynamics of Autonomous Non-LTR Retrotransposons in the Lizard Anolis Carolinensis Shows More Similarity to Fish Than Mammals

(2009) P. A. Novick et al.   MOLECULAR BIOLOGY AND EVOLUTION

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Global Cooling During the Eocene-Oligocene Climate Transition

(2009) Z. Liu et al.   SCIENCE

Loss of LINE-1 Activity in the Megabats

(2008) Michael A. Cantrell et al.   GENETICS

Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus

(2008) D. A. Ray et al.   GENOME RESEARCH

Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods

(2008) J. K. Pace et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroRNAs and the advent of vertebrate morphological complexity

(2008) A. M. Heimberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental validation of miRNA targets

(2007) Donald E. Kuhn et al.   METHODS