SBOL Visual: A Graphical Language for Genetic Designs

Quantifying cellular capacity identifies gene expression designs with reduced burden

(2015) Francesca Ceroni et al.   NATURE METHODS

YeastFab: the design and construction of standard biological parts for metabolic engineering inSaccharomyces cerevisiae

(2015) Yakun Guo et al.   NUCLEIC ACIDS RESEARCH

The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology

(2014) Michal Galdzicki et al.   NATURE BIOTECHNOLOGY

CRISPR transcriptional repression devices and layered circuits in mammalian cells

(2014) Samira Kiani et al.   NATURE METHODS

The Influence of Promoter Architectures and Regulatory Motifs on Gene Expression in Escherichia coli

(2014) Mattias Rydenfelt et al.   PLoS One

Accurate Predictions of Genetic Circuit Behavior from Part Characterization and Modular Composition

(2014) Noah Davidsohn et al.   ACS Synthetic Biology

High-level semi-synthetic production of the potent antimalarial artemisinin

(2013) C. J. Paddon et al.   NATURE

Composability of regulatory sequences controlling transcription and translation inEscherichia coli

(2013) Sriram Kosuri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Causes and Effects of N-Terminal Codon Bias in Bacterial Genes

(2013) D. B. Goodman et al.   SCIENCE

Pigeon: A Design Visualizer for Synthetic Biology

(2013) Swapnil Bhatia et al.   ACS Synthetic Biology

Effects of Genetic Variation on the E. coli Host-Circuit Interface

(2013) Stefano Cardinale et al.   Cell Reports

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast

(2012) R. Scott McIsaac et al.   NUCLEIC ACIDS RESEARCH

Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca

(2012) K. Temme et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

Automatic Compilation from High-Level Biologically-Oriented Programming Language to Genetic Regulatory Networks

(2011) Jacob Beal et al.   PLoS One

The Systems Biology Graphical Notation

(2009) Nicolas Le Novère et al.   NATURE BIOTECHNOLOGY

Regulatory activity revealed by dynamic correlations in gene expression noise

(2008) Mary J Dunlop et al.   NATURE GENETICS