Metagenomic insights into communities, functions of endophytes and their associates with infection by root-knot nematode, Meloidogyne incognita, in tomato roots

Specific Microbial Attachment to Root Knot Nematodes in Suppressive Soil

(2014) M. Adam et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

Bacteria can mobilize nematode-trapping fungi to kill nematodes

(2014) Xin Wang et al.   Nature Communications

The plant cell wall in the feeding sites of cyst nematodes

(2014) Holger Bohlmann et al.   Frontiers in Plant Science

Inside the root microbiome: Bacterial root endophytes and plant growth promotion

(2013) Jonathan R. Gaiero et al.   AMERICAN JOURNAL OF BOTANY

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Effect of root nitrogen supply forms on attraction and repulsion of second-stage juveniles of Meloidogyne graminicola

(2013) Jagadeesh Patil et al.   NEMATOLOGY

Nematode feeding sites: unique organs in plant roots

(2013) Tina Kyndt et al.   PLANTA

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots

(2013) Sujai Kumar et al.   Frontiers in Genetics

Complete Genome Sequence of the Anaerobic Perchlorate-Reducing Bacterium Azospira suillum Strain PS

(2012) K. G. Byrne-Bailey et al.   JOURNAL OF BACTERIOLOGY

Twenty-One Genome Sequences from Pseudomonas Species and 19 Genome Sequences from Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides

(2012) S. D. Brown et al.   JOURNAL OF BACTERIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Functional diversity within the simple gut microbiota of the honey bee

(2012) P. Engel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simultaneous genome sequencing of symbionts and their hosts

(2012) Sujai Kumar et al.   SYMBIOSIS

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Cellulose-degrading bacteria associated with the invasive woodwasp Sirex noctilio

(2011) Aaron S Adams et al.   ISME Journal

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Functional Characteristics of an Endophyte Community Colonizing Rice Roots as Revealed by Metagenomic Analysis

(2011) A. Sessitsch et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Endophytic and rhizospheric enterobacteria isolated from sugar cane have different potentials for producing plant growth-promoting substances

(2011) Felipe Ibañez de Santi Ferrara et al.   PLANT AND SOIL

Aphid genome expression reveals host-symbiont cooperation in the production of amino acids

(2011) A. K. Hansen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biodiversity, bioactive natural products and biotechnological potential of plant-associated endophytic actinobacteria

(2010) Sheng Qin et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Community- and Genome-Based Views of Plant-Associated Bacteria: Plant–Bacterial Interactions in Soybean and Rice

(2010) Seishi Ikeda et al.   PLANT AND CELL PHYSIOLOGY

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

(2010) Etienne G. J. Danchin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Auxin and Plant-Microbe Interactions

(2010) S. Spaepen et al.   Cold Spring Harbor Perspectives in Biology

Comparison of rhizobacterial community composition in soil suppressive or conducive to tobacco black root rot disease

(2009) Martina Kyselková et al.   ISME Journal

Plant cell walls: Protecting the barrier from degradation by microbial enzymes

(2009) Stijn Lagaert et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

FOLy: An integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds

(2008) Anthony Levasseur et al.   FUNGAL GENETICS AND BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Biological control and sustainable food production

(2007) J.S Bale et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES