Whole-genome sequencing reveals the effect of vaccination on the evolution of Bordetella pertussis

Genomic Analysis of Isolates From the United Kingdom 2012 Pertussis Outbreak Reveals That Vaccine Antigen Genes Are Unusually Fast Evolving

(2014) Katie L. Sealey et al.   JOURNAL OF INFECTIOUS DISEASES

Global Population Structure and Evolution of Bordetella pertussis and Their Relationship with Vaccination

(2014) M. J. Bart et al.   mBio

Genome-Wide Gene Expression Analysis of Bordetella pertussis Isolates Associated with a Resurgence in Pertussis: Elucidation of Factors Involved in the Increased Fitness of Epidemic Strains

(2013) Audrey J. King et al.   PLoS One

Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens

(2012) Jihye Park et al.   BMC GENOMICS

Rapid detection of the recently emerged Bordetella pertussis strains with the ptxP3 pertussis toxin promoter allele by real-time PCR

(2012) T. Kallonen et al.   CLINICAL MICROBIOLOGY AND INFECTION

Pulsed-Field Gel Electrophoresis Analysis of Bordetella pertussis Isolates Circulating in Europe from 1998 to 2009

(2012) A. Advani et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Newly Emerging Clones of Bordetella pertussis Carrying prn2 and ptxP3 Alleles Implicated in Australian Pertussis Epidemic in 2008–2010

(2012) Sophie Octavia et al.   JOURNAL OF INFECTIOUS DISEASES

Small Mutations in Bordetella pertussis Are Associated with Selective Sweeps

(2012) Marjolein van Gent et al.   PLoS One

The multiplicity of divergence mechanisms in a single evolving population

(2012) Ram P Maharjan et al.   GENOME BIOLOGY

Differences in the genomic content of Bordetella pertussis isolates before and after introduction of pertussis vaccines in four European countries

(2011) Teemu Kallonen et al.   INFECTION GENETICS AND EVOLUTION

Complete Genome Sequence of Bordetella pertussis CS, a Chinese Pertussis Vaccine Strain

(2011) S. Zhang et al.   JOURNAL OF BACTERIOLOGY

Differential Expression of Type III Effector BteA Protein Due to IS481 Insertion in Bordetella pertussis

(2011) Hyun-Ja Han et al.   PLoS One

Appearance of Fim3 and ptxP3-Bordetella pertussis strains, in two regions of Sweden with different vaccination programs

(2011) Abdolreza Advani et al.   VACCINE

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

(2011) Joelle Amselem et al.   PLoS Genetics

Changes in the genomic content of circulating Bordetella pertussis strains isolated from the Netherlands, Sweden, Japan and Australia: adaptive evolution or drift?

(2010) Audrey J King et al.   BMC GENOMICS

Comparative genomics of prevaccination and modern Bordetella pertussis strains

(2010) Marieke J Bart et al.   BMC GENOMICS

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Bordetella pertussis and vaccination: The persistence of a genetically monomorphic pathogen

(2009) Frits R. Mooi   INFECTION GENETICS AND EVOLUTION

A Point Mutation in theagrLocus rather than Expression of the Panton‐Valentine Leukocidin Caused Previously Reported Phenotypes inStaphylococcus aureusPneumonia and Gene Regulation

(2009) Amer E. Villaruz et al.   JOURNAL OF INFECTIOUS DISEASES

The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae

(2008) Roy Gross et al.   BMC GENOMICS

Bordetella pertussis Expresses a Functional Type III Secretion System That Subverts Protective Innate and Adaptive Immune Responses

(2008) N. K. Fennelly et al.   INFECTION AND IMMUNITY

Effectiveness of Inactivated Influenza Vaccines Varied Substantially with Antigenic Match from the 2004–2005 Season to the 2006–2007 Season

(2008) Edward A. Belongia et al.   JOURNAL OF INFECTIOUS DISEASES

Genomic analysis and comparison of Bordetella pertussis isolates circulating in low and high vaccine coverage areas

(2008) Elisabeth Njamkepo et al.   MICROBES AND INFECTION

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Genomic Content of Bordetella pertussis Clinical Isolates Circulating in Areas of Intensive Children Vaccination

(2008) Valérie Bouchez et al.   PLoS One

A Recalibrated Molecular Clock and Independent Origins for the Cholera Pandemic Clones

(2008) Lu Feng et al.   PLoS One

Sequence context affects the rate of short insertions and deletions in flies and primates

(2008) Amos Tanay et al.   GENOME BIOLOGY