QMEC: a tool for high-throughput quantitative assessment of microbial functional potential in C, N, P, and S biogeochemical cycling

The microbial nitrogen-cycling network

(2018) Marcel M. M. Kuypers et al.   NATURE REVIEWS MICROBIOLOGY

Enhanced decomposition of stable soil organic carbon and microbial catabolic potentials by long-term field warming

(2017) Wenting Feng et al.   GLOBAL CHANGE BIOLOGY

The Use of Degenerate Primers in qPCR Analysis of Functional Genes Can Cause Dramatic Quantification Bias as Revealed by Investigation of nifH Primer Performance

(2017) John Christian Gaby et al.   MICROBIAL ECOLOGY

Continental-scale pollution of estuaries with antibiotic resistance genes

(2017) Yong-Guan Zhu et al.   Nature Microbiology

Long-term nitrogen fertilization decreased the abundance of inorganic phosphate solubilizing bacteria in an alkaline soil

(2017) Bang-Xiao Zheng et al.   Scientific Reports

Effects of earthworms and substrate on diversity and abundance of denitrifying genes ( nir S and nir K) and denitrifying rate during rural domestic wastewater treatment

(2016) Longmian Wang et al.   BIORESOURCE TECHNOLOGY

phoDAlkaline Phosphatase Gene Diversity in Soil

(2015) Sabine A. Ragot et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Assessing nitrogen transformation processes in a trickling filter under hydraulic loading rate constraints using nitrogen functional gene abundances

(2015) Honglei Wang et al.   BIORESOURCE TECHNOLOGY

Antibiotic Resistome and Its Association with Bacterial Communities during Sewage Sludge Composting

(2015) Jian-Qiang Su et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Elevated carbon dioxide accelerates the spatial turnover of soil microbial communities

(2015) Ye Deng et al.   GLOBAL CHANGE BIOLOGY

Higher diversity and abundance of denitrifying microorganisms in environments than considered previously

(2015) Wei Wei et al.   ISME Journal

Target enrichment using parallel nanoliter quantitative PCR amplification

(2014) Bram De Wilde et al.   BMC GENOMICS

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques

(2013) Inka Vanwonterghem et al.   CURRENT OPINION IN BIOTECHNOLOGY

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Response of the Abundance of Key Soil Microbial Nitrogen-Cycling Genes to Multi-Factorial Global Changes

(2013) Ximei Zhang et al.   PLoS One

Human-induced nitrogen–phosphorus imbalances alter natural and managed ecosystems across the globe

(2013) Josep Peñuelas et al.   Nature Communications

Beyond the genome: community-level analysis of the microbial world

(2012) Iratxe Zarraonaindia et al.   BIOLOGY & PHILOSOPHY

Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska

(2012) Dorthe Groth Petersen et al.   ENVIRONMENTAL MICROBIOLOGY

Identification of Active Denitrifiers in Rice Paddy Soil by DNA- and RNA-Based Analyses

(2012) Megumi Yoshida et al.   MICROBES AND ENVIRONMENTS

Genomic approaches to studying the human microbiota

(2012) George M. Weinstock   NATURE

In-feed antibiotic effects on the swine intestinal microbiome

(2012) T. Looft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of functional gene microarrays for microbial community analysis

(2011) Zhili He et al.   CURRENT OPINION IN BIOTECHNOLOGY

Huanglongbing alters the structure and functional diversity of microbial communities associated with citrus rhizosphere

(2011) Pankaj Trivedi et al.   ISME Journal

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

(2011) Zhenmei Lu et al.   ISME Journal

qPCR: quicker and easier but don't be sloppy

(2011) Monya Baker   NATURE METHODS

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity

(2010) Zhili He et al.   ISME Journal

Functional gene diversity of soil microbial communities from five oil-contaminated fields in China

(2010) Yuting Liang et al.   ISME Journal

Quantitative analysis of a deeply sequenced marine microbial metatranscriptome

(2010) Scott M Gifford et al.   ISME Journal

Target-enrichment strategies for next-generation sequencing

(2010) Lira Mamanova et al.   NATURE METHODS

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria

(2010) Terry C. Hazen et al.   SCIENCE

Reproducibility of quantitative RT-PCR array in miRNA expression profiling and comparison with microarray analysis

(2009) Yongxin Chen et al.   BMC GENOMICS

Abundances of crenarchaealamoAgenes and transcripts in the Pacific Ocean

(2009) Matthew J. Church et al.   ENVIRONMENTAL MICROBIOLOGY

The alkaline phosphatase PhoX is more widely distributed in marine bacteria than the classical PhoA

(2009) Marta Sebastian et al.   ISME Journal

GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent

(2009) F. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Denitrification Activity and Relevant Bacteria Revealed by Nitrite Reductase Gene Fragments in Soil of Temperate Mixed Forest

(2008) Chie Katsuyama et al.   MICROBES AND ENVIRONMENTS

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial scaling of functional gene diversity across various microbial taxa

(2008) J. Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA