Lights and shadows of proteomic technologies for the study of protein species including isoforms, splicing variants and protein post-translational modifications

Size-Sorting Combined with Improved Nanocapillary Liquid Chromatography−Mass Spectrometry for Identification of Intact Proteins up to 80 kDa

(2010) Adaikkalam Vellaichamy et al.   ANALYTICAL CHEMISTRY

Analysis of Root Plasma Membrane Aquaporins fromBrassica oleracea: Post-Translational Modifications,de novoSequencing and Detection of Isoforms by High Resolution Mass Spectrometry

(2010) J. Casado-Vela et al.   JOURNAL OF PROTEOME RESEARCH

Expansion of the eukaryotic proteome by alternative splicing

(2010) Timothy W. Nilsen et al.   NATURE

Quantitative analysis of intact apolipoproteins in human HDL by top-down differential mass spectrometry

(2010) Matthew T. Mazur et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Investigating protein isoforms via proteomics: A feasibility study

(2010) Paul Blakeley et al.   PROTEOMICS

Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics

(2009) Paola Picotti et al.   CELL

Finding one's way in proteomics: a protein species nomenclature

(2009) Hartmut Schlüter et al.   Chemistry Central Journal

Automated Detection of Inaccurate and Imprecise Transitions in Peptide Quantification by Multiple Reaction Monitoring Mass Spectrometry

(2009) S. E. Abbatiello et al.   CLINICAL CHEMISTRY

Comprehensive Proteomic Analysis of Human Endometrial Fluid Aspirate

(2009) Juan Casado-Vela et al.   JOURNAL OF PROTEOME RESEARCH

A robust two-dimensional separation for top-down tandem mass spectrometry of the low-mass proteome

(2009) Ji Eun Lee et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

(2009) Vincent A Fusaro et al.   NATURE BIOTECHNOLOGY

Erratum: Addendum: Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

(2009) Qun Pan et al.   NATURE GENETICS

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

The Universal Protein Resource (UniProt) in 2010

(2009)   NUCLEIC ACIDS RESEARCH

Isoforms of U1-70k Control Subunit Dynamics in the Human Spliceosomal U1 snRNP

(2009) Helena Hernández et al.   PLoS One

Differential Role of Human Choline Kinase α and β Enzymes in Lipid Metabolism: Implications in Cancer Onset and Treatment

(2009) David Gallego-Ortega et al.   PLoS One

Quantifying proteins by mass spectrometry: The selectivity of SRM is only part of the problem

(2009) Mark W. Duncan et al.   PROTEOMICS

How specific is my SRM?: The issue of precursor and product ion redundancy

(2009) Jamie Sherman et al.   PROTEOMICS

De novosequencing of peptides by MS/MS

(2009) Joerg Seidler et al.   PROTEOMICS

Characterization of Polyubiquitin Chain Structure by Middle-down Mass Spectrometry

(2008) Ping Xu et al.   ANALYTICAL CHEMISTRY

Gel-Eluted Liquid Fraction Entrapment Electrophoresis:  An Electrophoretic Method for Broad Molecular Weight Range Proteome Separation

(2008) John C. Tran et al.   ANALYTICAL CHEMISTRY

The speciation of the proteome

(2008) Peter R Jungblut et al.   Chemistry Central Journal

Choline Kinase Alpha Depletion Selectively Kills Tumoral Cells

(2008) Monica Banez-Coronel et al.   CURRENT CANCER DRUG TARGETS

Rapid and Effective Focusing in a Carrier Ampholyte Solution Isoelectric Focusing System: A Proteome Prefractionation Tool

(2008) John C. Tran et al.   JOURNAL OF PROTEOME RESEARCH

Proteomics of Multigenic Families from Species Underrepresented in Databases: The Case of Loquat (Eriobotrya japonicaLindl.) Polyphenol Oxidases

(2008) Susana Sellés-Marchart et al.   JOURNAL OF PROTEOME RESEARCH

How Much Peptide Sequence Information Is Contained in Ion Trap Tandem Mass Spectra?

(2008) J COX et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Molecular basis of xeroderma pigmentosum group C DNA recognition by engineered meganucleases

(2008) Pilar Redondo et al.   NATURE

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

(2008) Qun Pan et al.   NATURE GENETICS

A database of mass spectrometric assays for the yeast proteome

(2008) Paola Picotti et al.   NATURE METHODS

Ensembl 2009

(2008) T. J. P. Hubbard et al.   NUCLEIC ACIDS RESEARCH

Quantitative Mass Spectrometry Identifies Drug Targets in Cancer Stem Cell-Containing Side Population

(2008) Sebastian C.J. Steiniger et al.   STEM CELLS