Predicting the side-chain dihedral angle distributions of nonpolar, aromatic, and polar amino acids using hard sphere models

Intrinsic α-helical and β-sheet conformational preferences: A computational case study of alanine

(2014) Diego Caballero et al.   PROTEIN SCIENCE

New Insights into the Interdependence between Amino Acid Stereochemistry and Protein Structure

(2013) Alice Qinhua Zhou et al.   BIOPHYSICAL JOURNAL

The Power of Hard-Sphere Models: Explaining Side-Chain Dihedral Angle Distributions of Thr and Val

(2012) Alice Qinhua Zhou et al.   BIOPHYSICAL JOURNAL

Intrinsic Energy Landscapes of Amino Acid Side-Chains

(2012) Xiao Zhu et al.   Journal of Chemical Information and Modeling

Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles

(2012) Robert B. Best et al.   Journal of Chemical Theory and Computation

Revisiting the Ramachandran plot from a new angle

(2011) Alice Qinhua Zhou et al.   PROTEIN SCIENCE

Computational Design of Proteins Targeting the Conserved Stem Region of Influenza Hemagglutinin

(2011) S. J. Fleishman et al.   SCIENCE

A Smoothed Backbone-Dependent Rotamer Library for Proteins Derived from Adaptive Kernel Density Estimates and Regressions

(2011) Maxim V. Shapovalov et al.   STRUCTURE

Automated electron-density sampling reveals widespread conformational polymorphism in proteins

(2010) P. Therese Lang et al.   PROTEIN SCIENCE