Intrinsic α-helical and β-sheet conformational preferences: A computational case study of alanine
出版年份 2014 全文链接
标题
Intrinsic α-helical and β-sheet conformational preferences: A computational case study of alanine
作者
关键词
-
出版物
PROTEIN SCIENCE
Volume 23, Issue 7, Pages 970-980
出版商
Wiley
发表日期
2014-04-21
DOI
10.1002/pro.2481
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- New Insights into the Interdependence between Amino Acid Stereochemistry and Protein Structure
- (2013) Alice Qinhua Zhou et al. BIOPHYSICAL JOURNAL
- pH-Independence of Trialanine and the Effects of Termini Blocking in Short Peptides: A Combined Vibrational, NMR, UVCD, and Molecular Dynamics Study
- (2013) Siobhan Toal et al. JOURNAL OF PHYSICAL CHEMISTRY B
- The Power of Hard-Sphere Models: Explaining Side-Chain Dihedral Angle Distributions of Thr and Val
- (2012) Alice Qinhua Zhou et al. BIOPHYSICAL JOURNAL
- Critical Assessment of Current Force Fields. Short Peptide Test Case
- (2012) Jiří Vymětal et al. Journal of Chemical Theory and Computation
- The intrinsic conformational features of amino acids from a protein coil library and their applications in force field development
- (2012) Fan Jiang et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- An overview of the Amber biomolecular simulation package
- (2012) Romelia Salomon-Ferrer et al. Wiley Interdisciplinary Reviews-Computational Molecular Science
- Study on the conformational equilibrium of the alanine dipeptide in water solution by using the averaged solvent electrostatic potential from molecular dynamics methodology
- (2011) Francisco F. García-Prieto et al. JOURNAL OF CHEMICAL PHYSICS
- Optimizing Protein−Solvent Force Fields to Reproduce Intrinsic Conformational Preferences of Model Peptides
- (2011) Paul S. Nerenberg et al. Journal of Chemical Theory and Computation
- UsingJ-Coupling Constants for Force Field Validation: Application to Hepta-alanine
- (2011) Panagiota S. Georgoulia et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Water-Mediated Conformations of the Alanine Dipeptide as Revealed by Distributed Umbrella Sampling Simulations, Quantum Mechanics Based Calculations, and Experimental Data
- (2011) Víctor Cruz et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Revisiting the Ramachandran plot from a new angle
- (2011) Alice Qinhua Zhou et al. PROTEIN SCIENCE
- NMR-Based Protein Potentials
- (2010) Da-Wei Li et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Circular dichroism eigenspectra of polyproline II and β-strand conformers of trialanine in water: Singular value decomposition analysis
- (2010) Kwang-Im Oh et al. CHIRALITY
- Taming the complexity of protein folding
- (2010) Gregory R Bowman et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Implementation of the CHARMM Force Field in GROMACS: Analysis of Protein Stability Effects from Correction Maps, Virtual Interaction Sites, and Water Models
- (2010) Pär Bjelkmar et al. Journal of Chemical Theory and Computation
- UV Resonance Raman Investigation of the Conformations and Lowest Energy Allowed Electronic Excited States of Tri- and Tetraalanine: Charge Transfer Transitions
- (2010) Bhavya Sharma et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Solvation Effect on the Conformations of Alanine Dipeptide: Integral Equation Approach
- (2010) Ryosuke Ishizuka et al. Journal of Physical Chemistry Letters
- Atomic-Level Characterization of the Structural Dynamics of Proteins
- (2010) D. E. Shaw et al. SCIENCE
- CHARMM: The biomolecular simulation program
- (2009) B. R. Brooks et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Distribution of Conformations Sampled by the Central Amino Acid Residue in Tripeptides Inferred From Amide I Band Profiles and NMR Scalar Coupling Constants
- (2009) Reinhard Schweitzer-Stenner JOURNAL OF PHYSICAL CHEMISTRY B
- Optimized Molecular Dynamics Force Fields Applied to the Helix−Coil Transition of Polypeptides
- (2009) Robert B. Best et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Intrinsic Propensities of Amino Acid Residues in GxG Peptides Inferred from Amide I′ Band Profiles and NMR Scalar Coupling Constants
- (2009) Andrew Hagarman et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Conformational Properties of a Peptide Model for Unfolded α-Helices†
- (2008) Angela M. Firestine et al. BIOCHEMISTRY
- Are Current Molecular Dynamics Force Fields too Helical?
- (2008) Robert B. Best et al. BIOPHYSICAL JOURNAL
- Classical and quantum mechanical/molecular mechanical molecular dynamics simulations of alanine dipeptide in water: Comparisons with IR and vibrational circular dichroism spectra
- (2008) Kijeong Kwac et al. JOURNAL OF CHEMICAL PHYSICS
- GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
- (2008) Berk Hess et al. Journal of Chemical Theory and Computation
- Determination of Conformational Preferences of Dipeptides Using Vibrational Spectroscopy
- (2008) Jože Grdadolnik et al. JOURNAL OF PHYSICAL CHEMISTRY B
- The intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins
- (2008) D. A. C. Beck et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started