Article
Multidisciplinary Sciences
Jonathan J. Knowlton, Daniel Gestaut, Boxue Ma, Gwen Taylor, Alpay Burak Seven, Alexander Leitner, Gregory J. Wilson, Sreejesh Shanker, Nathan A. Yates, B. V. Venkataram Prasad, Ruedi Aebersold, Wah Chiu, Judith Frydman, Terence S. Dermody
Summary: The TRiC chaperonin plays a crucial role in folding and assembly of the reovirus sigma 3 capsid protein, interacting with a network of chaperones including prefoldin. This study sheds light on the molecular dynamics of sigma 3 folding and establishes a biological function for TRiC in virus assembly, while also providing structural and functional insights into how TRiC and prefoldin participate in protein complex assembly.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2021)
Article
Biochemistry & Molecular Biology
Lena Kraemer, Niko Dalheimer, Markus Raeschle, Zuzana Storchova, Jan Pielage, Felix Boos, Johannes M. Herrmann
Summary: The cytosol can transiently store mitochondrial precursor proteins in dedicated deposits called MitoStores, which suppress the toxic potential of accumulating precursor proteins and are controlled by Hsp42 and Hsp104.
Article
Multidisciplinary Sciences
Ashton N. Combs, Thomas J. Silhavy
Summary: This study reveals a novel role for the periplasmic chaperone Skp in the folding of outer membrane proteins (OMPs) in gram-negative bacteria. Skp removes membrane-integration-defective OMP substrates from the beta-barrel assembly machine (Bam) complex, allowing for clearance of stalled Bam-OMP complexes. Furthermore, Skp acts as an adaptor protein to facilitate the degradation of defective OMP substrates by the periplasmic protease DegP. These findings highlight the importance of Skp in ensuring efficient beta-barrel folding.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2022)
Review
Microbiology
Matthew Thomas Doyle, Harris D. Bernstein
Summary: The Omp85 protein superfamily is a group of proteins found in the outer membrane of gram-negative bacteria and bacterial-origin eukaryotic organelles. These proteins are involved in both membrane insertion and translocation of proteins across the outer membrane. Recent studies have uncovered new insights into the functions of these proteins, particularly the well-studied member BamA, which is essential for bacterial barrel assembly and has potential implications for antibiotic development.
ANNUAL REVIEW OF MICROBIOLOGY
(2022)
Review
Biochemistry & Molecular Biology
Chen Jiang, Max Wynne, Damon Huber
Summary: The Sec machinery in bacteria is responsible for transporting proteins across the cytoplasmic membrane, requiring the substrates to be in an unfolded conformation. To prevent folding in the cytoplasm, bacteria have evolved a complex quality control network consisting of three branches: avoidance of cytoplasmic intermediates, inhibition of folding Sec substrate proteins, and destruction of potential translocation inhibitors. Stress response pathways also help restore protein-folding homeostasis when environmental conditions inhibit translocation.
FRONTIERS IN MOLECULAR BIOSCIENCES
(2021)
Article
Multidisciplinary Sciences
Marco Janoschke, Mirjam Zimmermann, Anna Brunauer, Raffael Humbel, Tina Junne, Martin Spiess
Summary: The topology of membrane proteins is defined by the integration of alpha-helical transmembrane domains at the Sec61 translocon. Different sequences preceding a potential transmembrane domain significantly affect the hydrophobicity requirement for integration, with rapidly folding domains and strong chaperone binding facilitating efficient transmembrane integration.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2021)
Article
Biochemistry & Molecular Biology
Shuyue Zhao, Yiqing Song, Linlin Xu, Haodong Hu, Jianzu Wang, Fan Huang, Linqi Shi
Summary: Nanochaperones (nChaps) have significant potential in inhibiting protein aggregation and facilitating protein refolding. The interaction between nChaps and proteins is crucial for their chaperone-like functions, but the mechanism of this interaction is still unclear. This study prepares a series of nChaps with tunable hydrophilic-hydrophobic surfaces and systematically explores the process of nChaps-assisted denatured protein refolding. It is found that an appropriate hydrophilic-hydrophobic balance on the nChap surface is critical for enhancing protein renaturation by ensuring optimal interaction between nChap and protein, leading to suitable capture and sufficient release of client proteins. The findings of this work provide valuable insights for the design of nChaps and contribute to their future development.
MACROMOLECULAR BIOSCIENCE
(2023)
Article
Biochemistry & Molecular Biology
E. F. Elsiena Kuiper, Sarah M. Prophet, Christian Schlieker
Summary: This study summarizes the assembly process of the nuclear pore complex (NPC) and the defects related to human diseases, emphasizing the need for controlled condensation of phenylalanine-glycine repeat nucleoporins during NPC assembly to prevent aberrant condensation, aggregation, or amyloid formation. Defects in this process are associated with neurological disorders.
Article
Biochemistry & Molecular Biology
Xingyu Zhu, Moying Li, Rui Zhu, Yu Xin, Zitao Guo, Zhenghua Gu, Liang Zhang, Zhongpeng Guo
Summary: This study evaluated the effects of ER chaperones and translocation components on relieving ER stress and improving protein production in Y. lipolytica. The results showed that enhancing the non-dominant translocation pathway and the nucleotide exchange factor Sls1p boosted the production of two proteins. Furthermore, the combination of ER chaperones, translocation components, and Hac1p led to increased recombinant protein production and reduced ER stress on cell growth.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Chemistry, Multidisciplinary
Shihao Pang, Jiawei Liu, Tianlong Li, Kai Ye, Zexin Yan, Li Zhao, Chunyan Bao
Summary: This study reports an artificial receptor that achieves controllable ON/OFF signal transduction through conformational changes, providing a new model for constructing artificial signal transduction systems.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2023)
Article
Engineering, Biomedical
Nanxi Chen, Ye He, Mingming Zang, Youxi Zhang, Hongyan Lu, Qinfu Zhao, Siling Wang, Yikun Gao
Summary: Intracellular delivery of proteins is crucial for disease treatment and genetic engineering. Existing delivery strategies are inefficient, but endocytosis-independent intracellular delivery can improve efficiency and create new delivery pathways.
Article
Multidisciplinary Sciences
Michael J. Norris, Monica L. Husby, William B. Kiosses, Jieyun Yin, Roopashi Saxena, Linda J. Rennick, Anja Heiner, Stephanie S. Harkins, Rudramani Pokhrel, Sharon L. Schendel, Kathryn M. Hastie, Sara Landeras-Bueno, Zhe Li Salie, Benhur Lee, Prem P. Chapagain, Andrea Maisner, W. Paul Duprex, Robert Stahelin, Erica Ollmann Saphire
Summary: This study reveals the interaction between paramyxovirus M proteins and phosphatidylserine and phosphatidylinositol 4,5-bisphosphate at the plasma membrane, which induces membrane deformation, matrix layer polymerization, and virion assembly.
Article
Microbiology
Xu Wang, Janine H. Peterson, Harris D. Bernstein
Summary: This study identified two parallel mechanisms for the assembly of outer membrane proteins in Gram-negative bacteria, involving the beta signal and SurA. It challenges the view that periplasmic chaperones are redundant, suggesting they have specialized roles in OMP targeting and quality control.
Article
Chemistry, Physical
Meng Yu, Wei Si, Tao Zeng, Chang Chen, Xiaojing Lin, Zhouxiang Ji, Fei Guo, Yuxiang Li, Jingjie Sha, Yuliang Dong
Summary: This research used all-atom molecular dynamic simulations to uncover the microscopic mechanism behind current variation when single-stranded DNA passes through the MspA nanopore. It was found that nucleotide orientation and the region below the constriction of the nanopore play crucial roles in inducing current variation. These findings provide valuable insights for developing low-cost, high-throughput nanopore DNA sequencing technology.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS
(2021)
Review
Biochemistry & Molecular Biology
Zaida L. Almeida, Rui M. M. Brito
Summary: Protein aggregation and the formation of insoluble amyloid fibrils are intrinsic characteristics of amyloid diseases. Soluble oligomeric species formed during amyloid formation are highly cytotoxic and can lead to cell death and organ dysfunction. Disassembling preformed amyloids is a potential therapeutic strategy to arrest the progression of organ deterioration in amyloidosis. In this review, various chemical and biochemical agents capable of disaggregating amyloids are discussed, including their mode of action, structure, interactions with fibrillar structures, toxicity, and potential as treatment options.
Article
Cell Biology
Alexander Benjamin Schendzielorz, Christian Schulz, Oleksandr Lytovchenko, Anne Clancy, Bernard Guiard, Raffaele Ieva, Martin van der Laan, Peter Rehling
JOURNAL OF CELL BIOLOGY
(2017)
Article
Biochemistry & Molecular Biology
Uma Turakhiya, Karina von der Malsburg, Vicki A. M. Gold, Bernard Guiard, Agnieszka Chacinska, Martin van der Laan, Raffaele Ieva
JOURNAL OF MOLECULAR BIOLOGY
(2016)
Review
Biochemistry & Molecular Biology
Cecile Albenne, Raffaele Ieva
MOLECULAR MICROBIOLOGY
(2017)
Editorial Material
Immunology
Raffaele Ieva
Article
Biochemistry & Molecular Biology
Lena-Sophie Wenz, Lukasz Opalinski, Max-Hinderk Schuler, Lars Ellenrieder, Raffaele Ieva, Lena Boettinger, Jian Qiu, Martin van der Laan, Nils Wiedemann, Bernard Guiard, Nikolaus Pfanner, Thomas Becker
Article
Biochemistry & Molecular Biology
Raffaele Ieva, Sandra G. Schrempp, Lukasz Opalinski, Florian Wollweber, Philipp Hoess, Anna K. Heisswolf, Michael Gebert, Ying Zhang, Bernard Guiard, Sabine Rospert, Thomas Becker, Agnieszka Chacinska, Nikolaus Pfanner, Martin van der Laan
Article
Multidisciplinary Sciences
Olga Pavlova, Janine H. Peterson, Raffaele Ieva, Harris D. Bernstein
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2013)
Article
Multidisciplinary Sciences
Vicki A. M. Gold, Raffaele Ieva, Andreas Walter, Nikolaus Pfanner, Martin van der Laan, Werner Kuehlbrandt
NATURE COMMUNICATIONS
(2014)
Article
Multidisciplinary Sciences
Olga Pavlova, Raffaele Ieva, Harris D. Bernstein
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS
(2013)
Review
Biochemistry & Molecular Biology
Cyril Moulin, Anne Caumont-Sarcos, Raffaele Ieva
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
(2019)
Article
Biochemistry & Molecular Biology
Seoeun Lee, Hunsang Lee, Suji Yoo, Raffaele Leva, Martin van der Laan, Gunnar von Heijne, Hyun Kim
Article
Cell Biology
Anne Caumont-Sarcos, Cyril Moulin, Lucyle Poinot, Bernard Guiard, Martin van der Laan, Raffaele Ieva
Article
Biology
David Ranava, Yiying Yang, Luis Orenday-Tapia, Francois Rousset, Catherine Turlan, Violette Morales, Lun Cui, Cyril Moulin, Carine Froment, Gladys Munoz, Jerome Rech, Julien Marcoux, Anne Caumont-Sarcos, Cecile Albenne, David Bikard, Raffaele Ieva
Summary: Integral outer membrane proteins are crucial for maintaining envelope permeability in Proteobacteria, and DolP, a sigma(E)-upregulated outer membrane lipoprotein, is essential for fitness under envelope stress by interacting with the BAM complex and supporting OMP biogenesis. DolP's association with the mid-cell is linked to regulating septal peptidoglycan remodeling, and during envelope stress, this association is lost, potentially affecting cell division regulation.
Article
Biochemical Research Methods
Raffaele Ieva
BACTERIAL PROTEIN SECRETION SYSTEMS: Methods and Protocols
(2017)
Review
Microbiology
David Ranava, Anne Caumont-Sarcos, Cecile Albenne, Raffaele Ieva
FEMS MICROBIOLOGY LETTERS
(2018)