SNP discovery of Korean short day onion inbred lines using double digest restriction site-associated DNA sequencing

Molecular markers in the improvement of Allium crops

(2018) L.R.D. Chinnappareddy et al.   Czech Journal of Genetics and Plant Breeding

Association analysis of salt tolerance in cowpea (Vigna unguiculata (L.) Walp) at germination and seedling stages

(2017) Waltram Ravelombola et al.   THEORETICAL AND APPLIED GENETICS

Genome-Wide SNP Discovery and Analysis of Genetic Diversity in Farmed Sika Deer ( Cervus nippon ) in Northeast China Using Double-Digest Restriction Site-Associated DNA Sequencing

(2017) Hengxing Ba et al.   G3-Genes Genomes Genetics

Genotyping-by-Sequencing (GBS) Revealed Molecular Genetic Diversity of Iranian Wheat Landraces and Cultivars

(2017) Hadi Alipour et al.   Frontiers in Plant Science

Development of a Genetic Map for Onion (Allium cepa L.) Using Reference-Free Genotyping-by-Sequencing and SNP Assays

(2017) Jinkwan Jo et al.   Frontiers in Plant Science

Assessment of Genetic Diversity and Structure of Large Garlic (Allium sativum) Germplasm Bank, by Diversity Arrays Technology “Genotyping-by-Sequencing” Platform (DArTseq)

(2017) Leticia A. Egea et al.   Frontiers in Genetics

Analytical workflow of double-digest restriction site-associated DNA sequencing based on empirical andin silicooptimization in tomato

(2016) Kenta Shirasawa et al.   DNA RESEARCH

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Target Amplicon Sequencing for Genotyping Genome-Wide Single Nucleotide Polymorphisms Identified by Whole-Genome Resequencing in Peanut

(2016) Kenta Shirasawa et al.   Plant Genome

Genotyping-by-Sequencing SNP Identification for Crops without a Reference Genome: Using Transcriptome Based Mapping as an Alternative Strategy

(2016) Cécile Berthouly-Salazar et al.   Frontiers in Plant Science

Whole Genome Re-Sequencing and Characterization of Powdery Mildew Disease-Associated Allelic Variation in Melon

(2016) Sathishkumar Natarajan et al.   PLoS One

De Novo Assembly and Transcriptome Analysis of Bulb Onion (Allium cepa L.) during Cold Acclimation Using Contrasting Genotypes

(2016) Jeongsukhyeon Han et al.   PLoS One

Association mapping of QTLs for sclerotinia stem rot resistance in a collection of soybean plant introductions using a genotyping by sequencing (GBS) approach

(2015) Elmer Iquira et al.   BMC PLANT BIOLOGY

Integrated metabolomics for abiotic stress responses in plants

(2015) Ryo Nakabayashi et al.   CURRENT OPINION IN PLANT BIOLOGY

Analysis of genetic variation and diversity of Rice stripe virus populations through high-throughput sequencing

(2015) Lingzhe Huang et al.   Frontiers in Plant Science

Genome measures used for quality control are dependent on gene function and ancestry

(2014) Jing Wang et al.   BIOINFORMATICS

Effects of transplanting time and plant density on yield, quality and antioxidant content of onion (Allium cepa L.) in southern Italy

(2014) Gianluca Caruso et al.   SCIENTIA HORTICULTURAE

STRUCTURE PLOT: a program for drawing elegant STRUCTURE bar plots in user friendly interface

(2014) Ramesh Ramasamy et al.   SpringerPlus

Aginoside saponin, a potent antifungal compound, and secondary metabolite analyses from Allium nigrum L.

(2013) Abdelrahman Mostafa et al.   Phytochemistry Letters

Transcriptome sequencing to produce SNP-based genetic maps of onion

(2013) J. Duangjit et al.   THEORETICAL AND APPLIED GENETICS

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

High-throughput polymorphism detection and genotyping in Brassica napus using next-generation RAD sequencing

(2012) Anja Bus et al.   BMC GENOMICS

Development of robust genomic simple sequence repeat markers for estimation of genetic diversity within and among bulb onion (Allium cepa L.) populations

(2012) Samantha Baldwin et al.   MOLECULAR BREEDING

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Paired-end RAD-seq for de novo assembly and marker design without available reference

(2011) Eva-Maria Willing et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads

(2011) Paul D. Etter et al.   PLoS One

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS