De Novo Assembly and Transcriptome Analysis of Bulb Onion (Allium cepa L.) during Cold Acclimation Using Contrasting Genotypes
出版年份 2016 全文链接
标题
De Novo Assembly and Transcriptome Analysis of Bulb Onion (Allium cepa L.) during Cold Acclimation Using Contrasting Genotypes
作者
关键词
Thermal stresses, Transcriptome analysis, Plant resistance to abiotic stress, Gene ontologies, Gene expression, Transcription factors, Metabolic pathways, Sequence assembly tools
出版物
PLoS One
Volume 11, Issue 9, Pages e0161987
出版商
Public Library of Science (PLoS)
发表日期
2016-09-15
DOI
10.1371/journal.pone.0161987
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Molecular and Functional Characterization of FLOWERING LOCUS T Homologs in Allium cepa
- (2016) Ranjith Manoharan et al. MOLECULES
- Genome-wide analysis of the distribution of AP2/ERF transcription factors reveals duplication and CBFs genes elucidate their potential function in Brassica oleracea
- (2014) Senthil Thamilarasan et al. BMC GENOMICS
- De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification
- (2014) Steven A Yates et al. BMC GENOMICS
- Drought stress responses in crops
- (2014) Arun K. Shanker et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- Transcriptome analysis of newly classified bZIP transcription factors of Brassica rapa in cold stress response
- (2014) Indeok Hwang et al. GENOMICS
- De novo sequencing and transcriptome analysis of the desert shrub, Ammopiptanthus mongolicus, during cold acclimation using Illumina/Solexa
- (2013) Tao Pang et al. BMC GENOMICS
- De novo characterization of the Anthurium transcriptome and analysis of its digital gene expression under cold stress
- (2013) Dan-Qing Tian et al. BMC GENOMICS
- Molecular Characterization of Chenopodium album Chloroplast Small Heat Shock Protein and Its Expression in Response to Different Abiotic Stresses
- (2013) Noor Ul Haq et al. PLANT MOLECULAR BIOLOGY REPORTER
- Global Analysis of Transcriptome Responses and Gene Expression Profiles to Cold Stress of Jatropha curcas L.
- (2013) Haibo Wang et al. PLoS One
- Transcriptome sequencing to produce SNP-based genetic maps of onion
- (2013) J. Duangjit et al. THEORETICAL AND APPLIED GENETICS
- Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq
- (2012) Chao Feng et al. BMC GENOMICS
- De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)
- (2012) Dejun Li et al. BMC GENOMICS
- Identification and characterization of gene-based SSR markers in date palm (Phoenix dactylifera L.)
- (2012) Yongli Zhao et al. BMC PLANT BIOLOGY
- Primer3—new capabilities and interfaces
- (2012) Andreas Untergasser et al. NUCLEIC ACIDS RESEARCH
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems
- (2011) S Samuel Yang et al. BMC GENOMICS
- Engineering Cold Stress Tolerance in Crop Plants
- (2011) Gulzar S. Sanghera et al. CURRENT GENOMICS
- A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana
- (2011) Marcela A. Carvallo et al. JOURNAL OF EXPERIMENTAL BOTANY
- Molecular characterization of 60 isolated wheat MYB genes and analysis of their expression during abiotic stress
- (2011) Lichao Zhang et al. JOURNAL OF EXPERIMENTAL BOTANY
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- KEGG for integration and interpretation of large-scale molecular data sets
- (2011) M. Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Transcriptome Profiling of Dehydration Stress in the Chinese Cabbage (Brassica rapa L. ssp. pekinensis) by Tag Sequencing
- (2011) Shuancang Yu et al. PLANT MOLECULAR BIOLOGY REPORTER
- CBF-dependent signaling pathway: A key responder to low temperature stress in plants
- (2010) M.Q. Zhou et al. CRITICAL REVIEWS IN BIOTECHNOLOGY
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing
- (2010) Cinzia Cantacessi et al. NUCLEIC ACIDS RESEARCH
- Plant responses to cold: transcriptome analysis of wheat
- (2010) Mark O. Winfield et al. PLANT BIOTECHNOLOGY JOURNAL
- Molecular Basis of Plant Cold Acclimation: Insights Gained from Studying the CBF Cold Response Pathway
- (2010) M. F. Thomashow PLANT PHYSIOLOGY
- The CBFs: Three arabidopsis transcription factors to cold acclimate
- (2010) Joaquín Medina et al. PLANT SCIENCE
- Deep sequencing of the zebrafish transcriptome response to mycobacterium infection
- (2009) Zoltán Hegedűs et al. MOLECULAR IMMUNOLOGY
- Functions and mechanisms of the CBL–CIPK signaling system in plant response to abiotic stress
- (2009) Ruifen Li et al. Progress in Natural Science-Materials International
- High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
- (2008) Evandro Novaes et al. BMC GENOMICS
- Role of fructose in the adaptation of plants to cold-induced oxidative stress
- (2008) J. Bogdanović et al. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS
- Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array
- (2008) A. Matsui et al. PLANT AND CELL PHYSIOLOGY
- iPath: interactive exploration of biochemical pathways and networks
- (2008) Ivica Letunic et al. TRENDS IN BIOCHEMICAL SCIENCES
- msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design
- (2007) BRANT C. FAIRCLOTH Molecular Ecology Resources
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now