Rapid regrowth and detection of microbial contaminants in equine fecal microbiome samples
出版年份 2017 全文链接
标题
Rapid regrowth and detection of microbial contaminants in equine fecal microbiome samples
作者
关键词
Horses, Microbiome, Ribosomal RNA, Defecation, DNA extraction, Next-generation sequencing, Equines, Shannon index
出版物
PLoS One
Volume 12, Issue 11, Pages e0187044
出版商
Public Library of Science (PLoS)
发表日期
2017-11-02
DOI
10.1371/journal.pone.0187044
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Changes in the Total Fecal Bacterial Population in Individual Horses Maintained on a Restricted Diet Over 6 Weeks
- (2017) Kirsty Dougal et al. Frontiers in Microbiology
- Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping
- (2017) Amnon Amir et al. mSystems
- Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis
- (2016) Bo Yang et al. BMC BIOINFORMATICS
- Comparison of a modified phenol/chloroform and commercial-kit methods for extracting DNA from horse fecal material
- (2016) Ali H.D. Janabi et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Rapid Microbiome Changes in Freshly Deposited Cow Feces under Field Conditions
- (2016) Kelvin Wong et al. Frontiers in Microbiology
- Metagenomics uncovers gaps in amplicon-based detection of microbial diversity
- (2016) Emiley A. Eloe-Fadrosh et al. Nature Microbiology
- Exploiting rRNA operon copy number to investigate bacterial reproductive strategies
- (2016) Benjamin R. K. Roller et al. Nature Microbiology
- Intense Exercise and Aerobic Conditioning Associated with Chromium or L-Carnitine Supplementation Modified the Fecal Microbiota of Fillies
- (2016) Maria Luiza Mendes de Almeida et al. PLoS One
- A Microbiological Map of the Healthy Equine Gastrointestinal Tract
- (2016) Aaron C. Ericsson et al. PLoS One
- Comparison of Fecal Microbiota of Mongolian and Thoroughbred Horses by High-throughput Sequencing of the V4 Region of the 16S rRNA Gene
- (2015) Yiping Zhao et al. ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES
- Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission
- (2015) Cristina Rodriguez et al. BMC MICROBIOLOGY
- Changes in the equine fecal microbiota associated with the use of systemic antimicrobial drugs
- (2015) Marcio C Costa et al. BMC Veterinary Research
- The gut microbiota and host health: a new clinical frontier
- (2015) Julian R Marchesi et al. GUT
- Effect of preservation method on spider monkey (Ateles geoffroyi) fecal microbiota over 8weeks
- (2015) Vanessa L. Hale et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities
- (2015) Mads Albertsen et al. PLoS One
- Sample storage conditions significantly influence faecal microbiome profiles
- (2015) Jocelyn M Choo et al. Scientific Reports
- Sparse and Compositionally Robust Inference of Microbial Ecological Networks
- (2015) Zachary D. Kurtz et al. PLoS Computational Biology
- The Effects of Freezing on Faecal Microbiota as Determined Using MiSeq Sequencing and Culture-Based Investigations
- (2015) Fiona Fouhy et al. PLoS One
- Methods for Improving Human Gut Microbiome Data by Reducing Variability through Sample Processing and Storage of Stool
- (2015) Monika A. Gorzelak et al. PLoS One
- Comparative Evaluation of DNA Extraction Methods from Feces of Multiple Host Species for Downstream Next-Generation Sequencing
- (2015) Marcia L. Hart et al. PLoS One
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
- (2014) Susannah J Salter et al. BMC BIOLOGY
- The Earth Microbiome project: successes and aspirations
- (2014) Jack A Gilbert et al. BMC BIOLOGY
- Analysis of the Gut Microbiota by High-Throughput Sequencing of the V5–V6 Regions of the 16S rRNA Gene in Donkey
- (2014) Xinfeng Liu et al. CURRENT MICROBIOLOGY
- Characterisation of the Faecal Bacterial Community in Adult and Elderly Horses Fed a High Fibre, High Oil or High Starch Diet Using 454 Pyrosequencing
- (2014) Kirsty Dougal et al. PLoS One
- The core faecal bacterial microbiome of Irish Thoroughbred racehorses
- (2013) M.M. O' Donnell et al. LETTERS IN APPLIED MICROBIOLOGY
- The equine gastro-intestinal tract: An overview of the microbiota, disease and treatment
- (2013) L.M.T. Dicks et al. Livestock Science
- Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
- (2013) Morgan G I Langille et al. NATURE BIOTECHNOLOGY
- ANOVA-Like Differential Expression (ALDEx) Analysis for Mixed Population RNA-Seq
- (2013) Andrew D. Fernandes et al. PLoS One
- Identification of a Core Bacterial Community within the Large Intestine of the Horse
- (2013) Kirsty Dougal et al. PLoS One
- Storage conditions of intestinal microbiota matter in metagenomic analysis
- (2012) Silvia Cardona et al. BMC MICROBIOLOGY
- Pyrosequencing of 16S rRNA genes in fecal samples reveals high diversity of hindgut microflora in horses and potential links to chronic laminitis
- (2012) Samantha M Steelman et al. BMC Veterinary Research
- Comparison of the Fecal Microbiota of Healthy Horses and Horses with Colitis by High Throughput Sequencing of the V3-V5 Region of the 16S rRNA Gene
- (2012) Marcio C. Costa et al. PLoS One
- Characterization of the Fecal Microbiota Using High-Throughput Sequencing Reveals a Stable Microbial Community during Storage
- (2012) Ian M. Carroll et al. PLoS One
- PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers
- (2011) William A. Walters et al. BIOINFORMATICS
- Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons
- (2011) Megan L. Shepherd et al. FEMS MICROBIOLOGY LETTERS
- The under-recognized dominance of Verrucomicrobia in soil bacterial communities
- (2011) Gaddy T. Bergmann et al. SOIL BIOLOGY & BIOCHEMISTRY
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples
- (2010) Christian L. Lauber et al. FEMS MICROBIOLOGY LETTERS
- Examining the global distribution of dominant archaeal populations in soil
- (2010) Scott T Bates et al. ISME Journal
- Gut Microbiota in Health and Disease
- (2010) Inna Sekirov et al. PHYSIOLOGICAL REVIEWS
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Defining the natural habitat of Bacillus spore-formers
- (2009) Huynh A. Hong et al. RESEARCH IN MICROBIOLOGY
- The Role of Nutrition in Colic
- (2009) Andy E. Durham VETERINARY CLINICS OF NORTH AMERICA-EQUINE PRACTICE
- Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
- (2008) Micah Hamady et al. NATURE METHODS
- Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
- (2008) Harry J. Flint et al. NATURE REVIEWS MICROBIOLOGY
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