Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map
出版年份 2017 全文链接
标题
Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map
作者
关键词
Haplotypes, Pigments, Genetic loci, Quantitative trait loci, Wheat, Molecular genetics, Genome-wide association studies, Trait locus analysis
出版物
PLoS One
Volume 12, Issue 1, Pages e0170941
出版商
Public Library of Science (PLoS)
发表日期
2017-01-31
DOI
10.1371/journal.pone.0170941
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Genome-wide association mapping of quantitative traits in a breeding population of sugarcane
- (2016) Josefina Racedo et al. BMC PLANT BIOLOGY
- Genetic diversity, linkage disequilibrium, population structure and construction of a core collection of Prunus avium L. landraces and bred cultivars
- (2016) José Antonio Campoy et al. BMC PLANT BIOLOGY
- Alternative haplotype construction methods for genomic evaluation
- (2016) Dávid Jónás et al. JOURNAL OF DAIRY SCIENCE
- Genomic-assisted haplotype analysis and the development of high-throughput SNP markers for salinity tolerance in soybean
- (2016) Gunvant Patil et al. Scientific Reports
- Yield-related salinity tolerance traits identified in a nested association mapping (NAM) population of wild barley
- (2016) Stephanie Saade et al. Scientific Reports
- TaGS5-3A,a grain size gene selected during wheat improvement for larger kernel and yield
- (2015) Lin Ma et al. PLANT BIOTECHNOLOGY JOURNAL
- Genome-wide association studies in elite varieties of German winter barley using single-marker and haplotype-based methods
- (2015) Inka Gawenda et al. PLANT BREEDING
- A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes
- (2015) Katherine W Jordan et al. GENOME BIOLOGY
- Genomic prediction of genetic merit using LD-based haplotypes in the Nordic Holstein population
- (2015) Beatriz CD Cuyabano et al. BMC GENOMICS
- Major haplotype divergence including multiple germin-like protein genes, at the wheat Sr2 adult plant stem rust resistance locus
- (2014) Rohit Mago et al. BMC PLANT BIOLOGY
- Analysis of genetic population structure in Acacia caven (Leguminosae, Mimosoideae), comparing one exploratory and two Bayesian-model-based methods
- (2014) Carolina L. Pometti et al. GENETICS AND MOLECULAR BIOLOGY
- Durum wheat genomics comes of age
- (2014) Roberto Tuberosa et al. MOLECULAR BREEDING
- A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding
- (2014) Marco Maccaferri et al. PLANT BIOTECHNOLOGY JOURNAL
- Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array
- (2014) Shichen Wang et al. PLANT BIOTECHNOLOGY JOURNAL
- Global Selection on Sucrose Synthase Haplotypes during a Century of Wheat Breeding
- (2014) J. Hou et al. PLANT PHYSIOLOGY
- Exploiting SNP Correlations within Random Forest for Genome-Wide Association Studies
- (2014) Vincent Botta et al. PLoS One
- Major Soybean Maturity Gene Haplotypes Revealed by SNPViz Analysis of 72 Sequenced Soybean Genomes
- (2014) Tiffany Langewisch et al. PLoS One
- Genome-Wide Association Mapping for Kernel and Malting Quality Traits Using Historical European Barley Records
- (2014) Inge E. Matthies et al. PLoS One
- Whole Genome Association Mapping of Plant Height in Winter Wheat (Triticum aestivum L.)
- (2014) Christine D. Zanke et al. PLoS One
- Genetic Diversity Analysis of Highly Incomplete SNP Genotype Data with Imputations: An Empirical Assessment
- (2014) Yong-Bi Fu G3-Genes Genomes Genetics
- TASUKE: a web-based visualization program for large-scale resequencing data
- (2013) M. Kumagai et al. BIOINFORMATICS
- Random forests on Hadoop for genome-wide association studies of multivariate neuroimaging phenotypes
- (2013) Yue Wang et al. BMC BIOINFORMATICS
- Haplotype analysis of QTLs attributed to salinity tolerance in wheat (Triticum aestivum)
- (2013) Somaye Sardouie-Nasab et al. MOLECULAR BIOLOGY REPORTS
- HapRice, an SNP Haplotype Database and a Web Tool for Rice
- (2013) Jun-ichi Yonemaru et al. PLANT AND CELL PHYSIOLOGY
- Whole Genome Association Mapping of Fusarium Head Blight Resistance in European Winter Wheat (Triticum aestivum L.)
- (2013) Sonja Kollers et al. PLoS One
- Disentangling the Origins of Cultivated Sweet Potato (Ipomoea batatas (L.) Lam.)
- (2013) Caroline Roullier et al. PLoS One
- Impacts of Population Structure and Analytical Models in Genome-Wide Association Studies of Complex Traits in Forest Trees: A Case Study in Eucalyptus globulus
- (2013) Eduardo P. Cappa et al. PLoS One
- Genome-Wide Association Mapping of Root Traits in a Japonica Rice Panel
- (2013) Brigitte Courtois et al. PLoS One
- Correcting for Population Structure and Kinship Using the Linear Mixed Model: Theory and Extensions
- (2013) Gabriel E. Hoffman PLoS One
- Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars
- (2013) C. R. Cavanagh et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Association Study and Pathway-Level Analysis of Tocochromanol Levels in Maize Grain
- (2013) Alexander E. Lipka et al. G3-Genes Genomes Genetics
- Imputation of Unordered Markers and the Impact on Genomic Selection Accuracy
- (2013) Jessica E. Rutkoski et al. G3-Genes Genomes Genetics
- Genome-wide association mapping of flowering time and northern corn leaf blight (Setosphaeria turcica) resistance in a vast commercial maize germplasm set
- (2012) Delphine Van Inghelandt et al. BMC PLANT BIOLOGY
- QTL analysis of main and epistatic effects for flour color traits in durum wheat
- (2012) Pablo F. Roncallo et al. EUPHYTICA
- Haplotype analysis of molecular markers linked to stem rust resistance genes in Ethiopian improved durum wheat varieties and tetraploid wheat landraces
- (2012) Jemanesh K. Haile et al. GENETIC RESOURCES AND CROP EVOLUTION
- Haplotype variation at Badh2, the gene determining fragrance in rice
- (2012) Gaoneng Shao et al. GENOMICS
- Genome-Wide Haplotype Changes Produced by Artificial Selection during Modern Rice Breeding in Japan
- (2012) Jun-ichi Yonemaru et al. PLoS One
- Association Mapping and Haplotype Analysis of a 3.1-Mb Genomic Region Involved in Fusarium Head Blight Resistance on Wheat Chromosome 3BS
- (2012) Chenyang Hao et al. PLoS One
- adegenet 1.3-1: new tools for the analysis of genome-wide SNP data
- (2011) Thibaut Jombart et al. BIOINFORMATICS
- Insight into durum wheat Lpx-B1: a small gene family coding for the lipoxygenase responsible for carotenoid bleaching in mature grains
- (2011) Angelo Verlotta et al. BMC PLANT BIOLOGY
- A consensus linkage map for molecular markers and Quantitative Trait Loci associated with economically important traits in melon (Cucumis melo L.)
- (2011) Aurora Diaz et al. BMC PLANT BIOLOGY
- Forty-six years of genetic improvement in Canadian durum wheat cultivars
- (2011) J.M. Clarke et al. CANADIAN JOURNAL OF PLANT SCIENCE
- Diverse approaches to achieving grain yield in wheat
- (2011) Roberto A. Barrero et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- Quantitative trait loci for yellow pigment concentration and individual carotenoid compounds in durum wheat
- (2011) Antonio Blanco et al. JOURNAL OF CEREAL SCIENCE
- Single Nucleotide Polymorphisms and Haplotype Diversity in Rice Sucrose Synthase 3
- (2011) Puji Lestari et al. JOURNAL OF HEREDITY
- Comparative LD mapping using single SNPs and haplotypes identifies QTL for plant height and biomass as secondary traits of drought tolerance in maize
- (2011) Yanli Lu et al. MOLECULAR BREEDING
- Comparative SNP and Haplotype Analysis Reveals a Higher Genetic Diversity and Rapider LD Decay in Tropical than Temperate Germplasm in Maize
- (2011) Yanli Lu et al. PLoS One
- Haplotype Analysis Improved Evidence for Candidate Genes for Intramuscular Fat Percentage from a Genome Wide Association Study of Cattle
- (2011) William Barendse PLoS One
- Effect of population structure corrections on the results of association mapping tests in complex maize diversity panels
- (2011) Sofiane Mezmouk et al. THEORETICAL AND APPLIED GENETICS
- Identification of single nucleotide polymorphisms and haplotypes associated with yield and yield components in soybean (Glycine max) landraces across multiple environments
- (2011) Derong Hao et al. THEORETICAL AND APPLIED GENETICS
- Factors Affecting the Power of Haplotype Markers in Association Studies
- (2011) Martha T. Hamblin et al. Plant Genome
- A novel approach for haplotype-based association analysis using family data
- (2010) Yixuan Chen et al. BMC BIOINFORMATICS
- Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
- (2010) Thibaut Jombart et al. BMC GENETICS
- Brigade durum wheat
- (2010) J. M. Clarke et al. CANADIAN JOURNAL OF PLANT SCIENCE
- Gluten index compared with SDS-sedimentation volume for early generation selection for gluten strength in durum wheat
- (2010) F R Clarke et al. CANADIAN JOURNAL OF PLANT SCIENCE
- A general method for controlling the genome-wide type I error rate in linkage and association mapping experiments in plants
- (2010) B U Müller et al. HEREDITY
- Different mechanisms control lipoxygenase activity in durum wheat kernels
- (2010) Vanessa De Simone et al. JOURNAL OF CEREAL SCIENCE
- Molecular analysis of lipoxygenase (LOX) genes in common wheat and phylogenetic investigation of LOX proteins from model and crop plants
- (2010) Bo Feng et al. JOURNAL OF CEREAL SCIENCE
- Performance of Single Nucleotide Polymorphisms versus Haplotypes for Genome-Wide Association Analysis in Barley
- (2010) Aaron J. Lorenz et al. PLoS One
- A Variable-Sized Sliding-Window Approach for Genetic Association Studies via Principal Component Analysis
- (2009) Rui Tang et al. ANNALS OF HUMAN GENETICS
- Alternative splicing, activation of cryptic exons and amino acid substitutions in carotenoid biosynthetic genes are associated with lutein accumulation in wheat endosperm
- (2009) Crispin A. Howitt et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- Physical mapping of durum wheat lipoxygenase genes
- (2009) Ingrid Garbus et al. JOURNAL OF CEREAL SCIENCE
- Development of SNP markers and haplotype analysis of the candidate gene for rhg1, which confers resistance to soybean cyst nematode in soybean
- (2009) Ying-Hui Li et al. MOLECULAR BREEDING
- Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design
- (2009) S. Myles et al. PLANT CELL
- Using Association Mapping in Teosinte to Investigate the Function of Maize Selection-Candidate Genes
- (2009) Allison L. Weber et al. PLoS One
- Genetic Characterization and Linkage Disequilibrium Estimation of a Global Maize Collection Using SNP Markers
- (2009) Jianbing Yan et al. PLoS One
- QTL mapping for flour and noodle colour components and yellow pigment content in common wheat
- (2008) Yelun Zhang et al. EUPHYTICA
- Gains in power for exhaustive analyses of haplotypes using variable-sized sliding window strategy: a comparison of association-mapping strategies
- (2008) Yanfang Guo et al. EUROPEAN JOURNAL OF HUMAN GENETICS
- Comparison of Mixed-Model Approaches for Association Mapping
- (2008) B. Stich et al. GENETICS
- Efficient Control of Population Structure in Model Organism Association Mapping
- (2008) H. M. Kang et al. GENETICS
- QTL analysis of pasta quality using a composite microsatellite and SNP map of durum wheat
- (2008) W. Zhang et al. THEORETICAL AND APPLIED GENETICS
- Association between allelic variation at the Phytoene synthase 1 gene and yellow pigment content in the wheat grain
- (2008) W. Zhang et al. THEORETICAL AND APPLIED GENETICS
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