A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems
出版年份 2017 全文链接
标题
A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems
作者
关键词
-
出版物
PLoS One
Volume 12, Issue 2, Pages e0171744
出版商
Public Library of Science (PLoS)
发表日期
2017-02-11
DOI
10.1371/journal.pone.0171744
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process
- (2016) Sabine Koch et al. Biotechnology for Biofuels
- Marine microbial community dynamics and their ecological interpretation
- (2015) Jed A. Fuhrman et al. NATURE REVIEWS MICROBIOLOGY
- Metabolic network modeling of microbial communities
- (2015) Matthew B. Biggs et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- Where Next for Microbiome Research?
- (2015) Matthew K. Waldor et al. PLOS BIOLOGY
- Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach
- (2015) Philippe Bordron et al. MicrobiologyOpen
- d-OptCom: Dynamic Multi-level and Multi-objective Metabolic Modeling of Microbial Communities
- (2014) Ali R. Zomorrodi et al. ACS Synthetic Biology
- Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring
- (2013) Christian G Klatt et al. ISME Journal
- Statistical physics of self-replication
- (2013) Jeremy L. England JOURNAL OF CHEMICAL PHYSICS
- Benson type algorithms for linear vector optimization and applications
- (2013) Andreas H. Hamel et al. JOURNAL OF GLOBAL OPTIMIZATION
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
- (2013) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- Community Flux Balance Analysis for Microbial Consortia at Balanced Growth
- (2013) Ruchir A. Khandelwal et al. PLoS One
- Global distribution of microbial abundance and biomass in subseafloor sediment
- (2012) J. Kallmeyer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multidimensional Optimality of Microbial Metabolism
- (2012) R. Schuetz et al. SCIENCE
- OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities
- (2012) Ali R. Zomorrodi et al. PLoS Computational Biology
- Ecosystems biology of microbial metabolism
- (2011) Niels Klitgord et al. CURRENT OPINION IN BIOTECHNOLOGY
- Recent advances in reconstruction and applications of genome-scale metabolic models
- (2011) Tae Yong Kim et al. CURRENT OPINION IN BIOTECHNOLOGY
- A dual variant of Benson’s “outer approximation algorithm” for multiple objective linear programming
- (2011) Matthias Ehrgott et al. JOURNAL OF GLOBAL OPTIMIZATION
- eQuilibrator--the biochemical thermodynamics calculator
- (2011) A. Flamholz et al. NUCLEIC ACIDS RESEARCH
- A gentle introduction to the thermodynamics of biochemical stoichiometric networks in steady state
- (2010) M. Kschischo European Physical Journal-Special Topics
- An approximation algorithm for convex multi-objective programming problems
- (2010) Matthias Ehrgott et al. JOURNAL OF GLOBAL OPTIMIZATION
- Integrated stoichiometric, thermodynamic and kinetic modelling of steady state metabolism
- (2010) R.M.T. Fleming et al. JOURNAL OF THEORETICAL BIOLOGY
- A protocol for generating a high-quality genome-scale metabolic reconstruction
- (2010) Ines Thiele et al. Nature Protocols
- In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study
- (2009) Reed Taffs et al. BMC Systems Biology
- Trait-Based Community Ecology of Phytoplankton
- (2008) Elena Litchman et al. Annual Review of Ecology Evolution and Systematics
- Regulation of nif gene expression and the energetics of N2 fixation over the diel cycle in a hot spring microbial mat
- (2008) Anne-Soisig Steunou et al. ISME Journal
- Large-scale reconstruction and phylogenetic analysis of metabolic environments
- (2008) E. Borenstein et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More