3DLigandSite: predicting ligand-binding sites using similar structures

PSiFR: an integrated resource for prediction of protein structure and function

(2010) S. B. Pandit et al.   BIOINFORMATICS

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

SITEHOUND-web: a server for ligand binding site identification in protein structures

(2009) M. Hernandez et al.   NUCLEIC ACIDS RESEARCH

Prediction of ligand binding sites using homologous structures and conservation at CASP8

(2009) Mark N. Wass et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of ligand binding residue predictions in CASP8

(2009) Gonzalo López et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure

(2009) John A. Capra et al.   PLoS Computational Biology

Characterization and prediction of residues determining protein functional specificity

(2008) John A. Capra et al.   BIOINFORMATICS

Prediction of protein functional residues from sequence by probability density estimation

(2008) J. D. Fischer et al.   BIOINFORMATICS

The Universal Protein Resource (UniProt) 2009

(2008)   NUCLEIC ACIDS RESEARCH

MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison

(2002) Angel R. Ortiz et al.   PROTEIN SCIENCE