A Complete Fossil-Calibrated Phylogeny of Seed Plant Families as a Tool for Comparative Analyses: Testing the ‘Time for Speciation’ Hypothesis

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

No substitute for real data: A cautionary note on the use of phylogenies from birth-death polytomy resolvers for downstream comparative analyses

(2015) Daniel L. Rabosky   EVOLUTION

Revisiting the origin and diversification of vascular plants through a comprehensive Bayesian analysis of the fossil record

(2015) Daniele Silvestro et al.   NEW PHYTOLOGIST

Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications

(2015) David C. Tank et al.   NEW PHYTOLOGIST

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

(2015) Cody E. Hinchliff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On Age and Species Richness of Higher Taxa

(2014) Tanja Stadler et al.   AMERICAN NATURALIST

The enigma of the rise of angiosperms: can we untie the knot?

(2014) L. Augusto et al.   ECOLOGY LETTERS

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

Parasitic plants have increased rates of molecular evolution across all three genomes

(2013) Lindell Bromham et al.   BMC EVOLUTIONARY BIOLOGY

Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead

(2013) Simon Joly et al.   Molecular Ecology Resources

Three keys to the radiation of angiosperms into freezing environments

(2013) Amy E. Zanne et al.   NATURE

Taller plants have lower rates of molecular evolution

(2013) Robert Lanfear et al.   Nature Communications

PASTIS: an R package to facilitate phylogenetic assembly with soft taxonomic inferences

(2013) Gavin H. Thomas et al.   Methods in Ecology and Evolution

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

The global diversity of birds in space and time

(2012) W. Jetz et al.   NATURE

Hemisphere-scale differences in conifer evolutionary dynamics

(2012) A. B. Leslie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Clade Age and Species Richness Are Decoupled Across the Eukaryotic Tree of Life

(2012) Daniel L. Rabosky et al.   PLOS BIOLOGY

Understanding angiosperm diversification using small and large phylogenetic trees

(2011) S. A. Smith et al.   AMERICAN JOURNAL OF BOTANY

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians

(2011) R. Alexander Pyron et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

Mammalian phylogeny reveals recent diversification rate shifts

(2011) T. Stadler   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Causes Of Species Richness Patterns Across Space, Time, And Clades And The Role Of “Ecological Limits”

(2011) John J. Wiens   QUARTERLY REVIEW OF BIOLOGY

A simple polytomy resolver for dated phylogenies

(2011) Tyler S. Kuhn et al.   Methods in Ecology and Evolution

The age and diversification of the angiosperms re-revisited

(2010) Charles D. Bell et al.   AMERICAN JOURNAL OF BOTANY

The expected length of pendant and interior edges of a Yule tree

(2010) Mike Steel et al.   APPLIED MATHEMATICS LETTERS

Key innovations within a geographical context in flowering plants: towards resolving Darwin’s abominable mystery

(2010) Jana C. Vamosi et al.   ECOLOGY LETTERS

An uncorrelated relaxed-clock analysis suggests an earlier origin for flowering plants

(2010) S. A. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Equilibrium speciation dynamics in a model adaptive radiation of island lizards

(2010) D. L. Rabosky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches

(2009) Stephen A Smith et al.   BMC EVOLUTIONARY BIOLOGY

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

(2009)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Ecological limits and diversification rate: alternative paradigms to explain the variation in species richness among clades and regions

(2009) Daniel L. Rabosky   ECOLOGY LETTERS

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

(2009) M. E. Alfaro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The give-and-take of DNA: horizontal gene transfer in plants

(2009) Ralph Bock   TRENDS IN PLANT SCIENCE

Phylogenetic placement ofCynomoriumin Rosales inferred from sequences of the inverted repeat region of the chloroplast genome

(2009) Zhi-Hong ZHANG et al.   Journal of Systematics and Evolution

Angiosperm diversification through time

(2008) Susana Magallón et al.   AMERICAN JOURNAL OF BOTANY

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

(2008) S. Kumar et al.   BRIEFINGS IN BIOINFORMATICS

Phylogenetic patterns of species loss in Thoreau's woods are driven by climate change

(2008) C. G. Willis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Density-Dependent Cladogenesis in Birds

(2008) Albert B Phillimore et al.   PLOS BIOLOGY