Genome-Based Identification of Active Prophage Regions by Next Generation Sequencing in Bacillus licheniformis DSM13

When a virus is not a parasite: the beneficial effects of prophages on bacterial fitness

(2014) Joseph Bondy-Denomy et al.   JOURNAL OF MICROBIOLOGY

TraV: A Genome Context Sensitive Transcriptome Browser

(2014) Sascha Dietrich et al.   PLoS One

Beyond the Chromosome: The Prevalence of Unique Extra-Chromosomal Bacteriophages with Integrated Virulence Genes in Pathogenic Staphylococcus aureus

(2014) Bryan Utter et al.   PLoS One

Construction of a Prophage-Free Variant of Corynebacterium glutamicum ATCC 13032 for Use as a Platform Strain for Basic Research and Industrial Biotechnology

(2013) Meike Baumgart et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biological and genomic analysis of a PBSX-like defective phage induced from Bacillus pumilus AB94180

(2013) Tingting Jin et al.   ARCHIVES OF VIROLOGY

RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation

(2013) Sandra Wiegand et al.   BMC GENOMICS

Size unlimited markerless deletions by a transconjugative plasmid-system in Bacillus licheniformis

(2013) Michael Rachinger et al.   JOURNAL OF BIOTECHNOLOGY

Cluster J Mycobacteriophages: Intron Splicing in Capsid and Tail Genes

(2013) Welkin H. Pope et al.   PLoS One

Prokaryote viruses studied by electron microscopy

(2012) H.-W. Ackermann et al.   ARCHIVES OF VIROLOGY

Chromosomal Replication Initiation Machinery of Low-G+C-Content Firmicutes

(2012) G. S. Briggs et al.   JOURNAL OF BACTERIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Insights into the Functions of a Prophage Recombination Directionality Factor

(2012) Gaël Panis et al.   Viruses-Basel

Small but Sufficient: the Rhodococcus Phage RRH1 Has the Smallest Known Siphoviridae Genome at 14.2 Kilobases

(2011) S. Petrovski et al.   JOURNAL OF VIROLOGY

Bacteriophages of lactic acid bacteria and their impact on milk fermentations

(2011) Josiane E Garneau et al.   Microbial Cell Factories

Evolution of mosaically related tailed bacteriophage genomes seen through the lens of phage P22 virion assembly

(2011) Sherwood R. Casjens et al.   VIROLOGY

Repression of sigK Intervening (skin) Element Gene Expression by the CI-Like Protein SknR and Effect of SknR Depletion on Growth of Bacillus subtilis Cells

(2010) T. Kimura et al.   JOURNAL OF BACTERIOLOGY

From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later

(2009) V. Barbe et al.   MICROBIOLOGY-SGM