Whole-Genome Analysis Revealed the Positively Selected Genes during the Differentiation of indica and Temperate japonica Rice

Rice DEP1, encoding a highly cysteine-rich G protein γ subunit, confers cadmium tolerance on yeast cells and plants

(2013) Shuta Kunihiro et al.   JOURNAL OF EXPERIMENTAL BOTANY

SALT-RESPONSIVE ERF1 Regulates Reactive Oxygen Species-Dependent Signaling during the Initial Response to Salt Stress in Rice

(2013) R. Schmidt et al.   PLANT CELL

OsMPK3 positively regulates the JA signaling pathway and plant resistance to a chewing herbivore in rice

(2013) Qi Wang et al.   PLANT CELL REPORTS

The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice

(2013) Gisele Passaia et al.   PLANT SCIENCE

Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice

(2013) Jun Zheng et al.   PLANT SCIENCE

Disruption of the Rice Plastid Ribosomal Protein S20 Leads to Chloroplast Developmental Defects and Seedling Lethality

(2013) Xiaodi Gong et al.   G3-Genes Genomes Genetics

Biochemical identification of the OsMKK6–OsMPK3 signalling pathway for chilling stress tolerance in rice

(2012) Guosheng Xie et al.   BIOCHEMICAL JOURNAL

Seven zinc-finger transcription factors are novel regulators of the stress responsive gene OsDREB1B

(2012) Duarte D. Figueiredo et al.   JOURNAL OF EXPERIMENTAL BOTANY

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Involvement of OsJAZ8 in Jasmonate-Induced Resistance to Bacterial Blight in Rice

(2012) Shoko Yamada et al.   PLANT AND CELL PHYSIOLOGY

The bHLH protein ROX acts in concert with RAX1 and LAS to modulate axillary meristem formation in Arabidopsis

(2012) Fang Yang et al.   PLANT JOURNAL

Footprints of natural and artificial selection for photoperiod pathway genes in Oryza

(2012) Chao-Li Huang et al.   PLANT JOURNAL

Comparative Transcriptome Profiling of Chilling Stress Responsiveness in Two Contrasting Rice Genotypes

(2012) Ting Zhang et al.   PLoS One

Simultaneous RNA-Seq Analysis of a Mixed Transcriptome of Rice and Blast Fungus Interaction

(2012) Yoshihiro Kawahara et al.   PLoS One

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

Ascorbate peroxidase-related (APx-R) is a new heme-containing protein functionally associated with ascorbate peroxidase but evolutionarily divergent

(2011) Fernanda Lazzarotto et al.   NEW PHYTOLOGIST

Increased Leaf Angle1, a Raf-Like MAPKKK That Interacts with a Nuclear Protein Family, Regulates Mechanical Tissue Formation in the Lamina Joint of Rice

(2011) J. Ning et al.   PLANT CELL

Genetic Control of a Transition from Black to Straw-White Seed Hull in Rice Domestication

(2011) B.-F. Zhu et al.   PLANT PHYSIOLOGY

Genome-Wide Identification, Characterization and Phylogenetic Analysis of the Rice LRR-Kinases

(2011) Xinli Sun et al.   PLoS One

Population Structure and Genetic Diversity in a Rice Core Collection (Oryza sativa L.) Investigated with SSR Markers

(2011) Peng Zhang et al.   PLoS One

Molecular evidence for a single evolutionary origin of domesticated rice

(2011) J. Molina et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Novel RNA-Recognition-Motif Protein Is Required for Premeiotic G1/S-Phase Transition in Rice (Oryza sativa L.)

(2011) Ken-Ichi Nonomura et al.   PLoS Genetics

Two Evolutionary Histories in the Genome of Rice: the Roles of Domestication Genes

(2011) Ziwen He et al.   PLoS Genetics

Arsenic stress activates MAP kinase in rice roots and leaves

(2010) Kudupudi Prabhakara Rao et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1–OsPti1a Phosphorylation Cascade in Rice

(2010) Hidenori Matsui et al.   PLANT AND CELL PHYSIOLOGY

Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development

(2010) MYOUNG-RYOUL PARK et al.   PLANT CELL AND ENVIRONMENT

A rice fungal MAMP-responsive MAPK cascade regulates metabolic flow to antimicrobial metabolite synthesis

(2010) Mitsuko Kishi-Kaboshi et al.   PLANT JOURNAL

Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes

(2010) Y. Mizuta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield

(2010) Taiichiro Ookawa et al.   Nature Communications

OsDEG10 encoding a small RNA-binding protein is involved in abiotic stress signaling

(2009) Hee-Yeon Park et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

γ-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates

(2009) Da-Peng Wang et al.   Biology Direct

The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death

(2009) Takashi Kaneda et al.   EMBO JOURNAL

A cold-induced thioredoxin h of rice, OsTrx23, negatively regulates kinase activities of OsMPK3 and OsMPK6 in vitro

(2009) Guosheng Xie et al.   FEBS LETTERS

Evolutionary History of GS3 , a Gene Conferring Grain Length in Rice

(2009) Noriko Takano-Kai et al.   GENETICS

Natural variation at the DEP1 locus enhances grain yield in rice

(2009) Xianzhong Huang et al.   NATURE GENETICS

Selection on grain shattering genes and rates of rice domestication

(2009) Lin-Bin Zhang et al.   NEW PHYTOLOGIST

Rice Axillary Meristem Formation Requires Directional Movement of LAX PANICLE1 Protein

(2009) J. Mach   PLANT CELL

Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice

(2009) T. Oikawa et al.   PLANT CELL

Defect in non-yellow coloring 3, an α/β hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice

(2009) Ryouhei Morita et al.   PLANT JOURNAL

The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice

(2009) Md. Amir Hossain et al.   PLANT MOLECULAR BIOLOGY

Expression Level of ABERRANT PANICLE ORGANIZATION1 Determines Rice Inflorescence Form through Control of Cell Proliferation in the Meristem

(2009) K. Ikeda-Kawakatsu et al.   PLANT PHYSIOLOGY

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

Control of a key transition from prostrate to erect growth in rice domestication

(2008) Lubin Tan et al.   NATURE GENETICS

Genetic control of rice plant architecture under domestication

(2008) Jian Jin et al.   NATURE GENETICS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Independent Losses of Function in a Polyphenol Oxidase in Rice: Differentiation in Grain Discoloration between Subspecies and the Role of Positive Selection under Domestication

(2008) Y. Yu et al.   PLANT CELL

Disruption of a novel gene for a NAC-domain protein in rice confers resistance toRice dwarf virus

(2008) Motoyasu Yoshii et al.   PLANT JOURNAL

Rice DREB1B promoter shows distinct stress-specific responses, and the overexpression of cDNA in tobacco confers improved abiotic and biotic stress tolerance

(2008) Linga Reddy Gutha et al.   PLANT MOLECULAR BIOLOGY

Characterization of OsbZIP23 as a Key Player of the Basic Leucine Zipper Transcription Factor Family for Conferring Abscisic Acid Sensitivity and Salinity and Drought Tolerance in Rice

(2008) Y. Xiang et al.   PLANT PHYSIOLOGY

A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice

(2008) J. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rice XB15, a Protein Phosphatase 2C, Negatively Regulates Cell Death and XA21-Mediated Innate Immunity

(2008) Chang-Jin Park et al.   PLOS BIOLOGY