Using Bioconductor Package BiGGR for Metabolic Flux Estimation Based on Gene Expression Changes in Brain
出版年份 2015 全文链接
标题
Using Bioconductor Package BiGGR for Metabolic Flux Estimation Based on Gene Expression Changes in Brain
作者
关键词
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出版物
PLoS One
Volume 10, Issue 3, Pages e0119016
出版商
Public Library of Science (PLoS)
发表日期
2015-03-26
DOI
10.1371/journal.pone.0119016
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- sybil – Efficient constraint-based modelling in R
- (2013) Gabriel Gelius-Dietrich et al. BMC Systems Biology
- Computational estimation of tricarboxylic acid cycle fluxes using noisy NMR data from cardiac biopsies
- (2013) Hannes Hettling et al. BMC Systems Biology
- COBRApy: COnstraints-Based Reconstruction and Analysis for Python
- (2013) Ali Ebrahim et al. BMC Systems Biology
- A community-driven global reconstruction of human metabolism
- (2013) Ines Thiele et al. NATURE BIOTECHNOLOGY
- The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum
- (2013) Rasmus Agren et al. PLoS Computational Biology
- Improving metabolic flux predictions using absolute gene expression data
- (2012) Dave Lee et al. BMC Systems Biology
- Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach
- (2012) Ali Navid et al. BMC Systems Biology
- FAME, the Flux Analysis and Modeling Environment
- (2012) Joost Boele et al. BMC Systems Biology
- Software applications for flux balance analysis
- (2012) M. Lakshmanan et al. BRIEFINGS IN BIOINFORMATICS
- Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
- (2011) Jan Schellenberger et al. Nature Protocols
- Simulating the physiology of athletes during endurance sports events: modelling human energy conversion and metabolism
- (2011) J. H. G. M. van Beek et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES
- Cerebral blood flow and metabolic rate of oxygen, glucose, lactate, pyruvate, ketone bodies and amino acids
- (2010) Ulla Lying-Tunell et al. ACTA NEUROLOGICA SCANDINAVICA
- SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networks
- (2010) A. Gevorgyan et al. BIOINFORMATICS
- Functional integration of a metabolic network model and expression data without arbitrary thresholding
- (2010) Paul A. Jensen et al. BIOINFORMATICS
- iMAT: an integrative metabolic analysis tool
- (2010) Hadas Zur et al. BIOINFORMATICS
- BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
- (2010) Jan Schellenberger et al. BMC BIOINFORMATICS
- Computationally efficient flux variability analysis
- (2010) Steinn Gudmundsson et al. BMC BIOINFORMATICS
- Integration of metabolic databases for the reconstruction of genome-scale metabolic networks
- (2010) Karin Radrich et al. BMC Systems Biology
- OptFlux: an open-source software platform for in silico metabolic engineering
- (2010) Isabel Rocha et al. BMC Systems Biology
- Large-scale in silico modeling of metabolic interactions between cell types in the human brain
- (2010) Nathan E Lewis et al. NATURE BIOTECHNOLOGY
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- Brain fuel metabolism, aging, and Alzheimer’s disease
- (2010) Stephen Cunnane et al. NUTRITION
- FBA-SimVis: interactive visualization of constraint-based metabolic models
- (2009) E. Grafahrend-Belau et al. BIOINFORMATICS
- Metabolica: A statistical research tool for analyzing metabolic networks
- (2009) Jenni Heino et al. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE
- Quantifying Food Web Flows Using Linear Inverse Models
- (2009) Dick van Oevelen et al. ECOSYSTEMS
- An integrative dynamic model of brain energy metabolism using in vivo neurochemical measurements
- (2009) Mathieu Cloutier et al. JOURNAL OF COMPUTATIONAL NEUROSCIENCE
- Hypergraphs and Cellular Networks
- (2009) Steffen Klamt et al. PLoS Computational Biology
- Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production
- (2009) Caroline Colijn et al. PLoS Computational Biology
- Astrocytes as the Glucose Shunt for Glutamatergic Neurons at High Activity: An In Silico Study
- (2008) Rossana Occhipinti et al. JOURNAL OF NEUROPHYSIOLOGY
- Alzheimer's disease is associated with reduced expression of energy metabolism genes in posterior cingulate neurons
- (2008) W. S. Liang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Context-Specific Metabolic Networks Are Consistent with Experiments
- (2008) Scott A. Becker et al. PLoS Computational Biology
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