PCR Primers to Study the Diversity of Expressed Fungal Genes Encoding Lignocellulolytic Enzymes in Soils Using High-Throughput Sequencing

Distribution and evolution of glycoside hydrolase family 45 cellulases in nematodes and fungi

(2014) Juan E Palomares-Rius et al.   BMC EVOLUTIONARY BIOLOGY

EctomycorrhizalCortinariusspecies participate in enzymatic oxidation of humus in northern forest ecosystems

(2014) Inga T. M. Bödeker et al.   NEW PHYTOLOGIST

Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers

(2014) Kenan Hadziavdic et al.   PLoS One

Widespread Occurrence of Expressed Fungal Secretory Peroxidases in Forest Soils

(2014) Harald Kellner et al.   PLoS One

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

MycoCosm portal: gearing up for 1000 fungal genomes

(2013) Igor V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

Illumina metabarcoding of a soil fungal community

(2013) Philipp-André Schmidt et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil Fungal Cellobiohydrolase I Gene (cbhI) Composition and Expression in a Loblolly Pine Plantation under Conditions of Elevated Atmospheric CO2and Nitrogen Fertilization

(2012) Carolyn F. Weber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

(2012) Henrik Aspeborg et al.   BMC EVOLUTIONARY BIOLOGY

Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions

(2012) Thomas Schneider et al.   ISME Journal

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

Performance comparison of benchtop high-throughput sequencing platforms

(2012) Nicholas J Loman et al.   NATURE BIOTECHNOLOGY

PeroxiBase: a database for large-scale evolutionary analysis of peroxidases

(2012) Nizar Fawal et al.   NUCLEIC ACIDS RESEARCH

Metatranscriptomics Reveals the Diversity of Genes Expressed by Eukaryotes in Forest Soils

(2012) Coralie Damon et al.   PLoS One

The Irreversible Loss of a Decomposition Pathway Marks the Single Origin of an Ectomycorrhizal Symbiosis

(2012) Benjamin E. Wolfe et al.   PLoS One

Differences in Soil Fungal Communities between European Beech (Fagus sylvatica L.) Dominated Forests Are Related to Soil and Understory Vegetation

(2012) Tesfaye Wubet et al.   PLoS One

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

Ectomycorrhizal communities in a Mediterranean forest ecosystem dominated by Quercus ilex: seasonal dynamics and response to drought in the surface organic horizon

(2011) Franck Richard et al.   ANNALS OF FOREST SCIENCE

Transcriptomic Responses of the Softwood-Degrading White-Rot Fungus Phanerochaete carnosa during Growth on Coniferous and Deciduous Wood

(2011) Jacqueline MacDonald et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Isolation of Cellulolytic Fungi from Waste of Castor (Ricinus communis L.)

(2011) Polyanna N. Herculano et al.   CURRENT MICROBIOLOGY

Responses of soil microbial communities to water stress: results from a meta-analysis

(2011) Stefano Manzoni et al.   ECOLOGY

Responses of soil cellulolytic fungal communities to elevated atmospheric CO2 are complex and variable across five ecosystems

(2011) Carolyn F. Weber et al.   ENVIRONMENTAL MICROBIOLOGY

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

Simulated Atmospheric N Deposition Alters Fungal Community Composition and Suppresses Ligninolytic Gene Expression in a Northern Hardwood Forest

(2011) Ivan P. Edwards et al.   PLoS One

Humus macro-morphology and soil microbial community changes along a 130-yr-old Fagus sylvatica chronosequence

(2011) Jean Trap et al.   SOIL BIOLOGY & BIOCHEMISTRY

Exploring laccase-like multicopper oxidase genes from the ascomycete Trichoderma reesei: a functional, phylogenetic and evolutionary study

(2010) Anthony Levasseur et al.   BMC BIOCHEMISTRY

Performance of the COX1 gene as a marker for the study of metabolically active Pezizomycotina and Agaricomycetes fungal communities from the analysis of soil RNA

(2010) Coralie Damon et al.   FEMS MICROBIOLOGY ECOLOGY

Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition

(2010) Jaroslav Šnajdr et al.   FEMS MICROBIOLOGY ECOLOGY

Influence of tree species on richness and diversity of epigeous fungal communities in a French temperate forest stand

(2010) Marc Buée et al.   Fungal Ecology

Production of extracellular enzymes and degradation of biopolymers by saprotrophic microfungi from the upper layers of forest soil

(2010) Petr Baldrian et al.   PLANT AND SOIL

Fungi Unearthed: Transcripts Encoding Lignocellulolytic and Chitinolytic Enzymes in Forest Soil

(2010) Harald Kellner et al.   PLoS One

Dual role of lignin in plant litter decomposition in terrestrial ecosystems

(2010) A. T. Austin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

ClassII peroxidase-encoding genes are present in a phylogenetically wide range of ectomycorrhizal fungi

(2009) Inga T M Bödeker et al.   ISME Journal

Plant cell walls throughout evolution: towards a molecular understanding of their design principles

(2009) P. Sarkar et al.   JOURNAL OF EXPERIMENTAL BOTANY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Quantification and monosaccharide composition of hemicelluloses from different plant functional types

(2009) Christina Schädel et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome, transcriptome, and secretome analysis of wood decay fungusPostia placentasupports unique mechanisms of lignocellulose conversion

(2009) Diego Martinez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temporal changes in diversity and expression patterns of fungal laccase genes within the organic horizon of a brown forest soil

(2009) Harald Kellner et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phenol oxidase, peroxidase and organic matter dynamics of soil

(2009) Robert L. Sinsabaugh   SOIL BIOLOGY & BIOCHEMISTRY

Isolation of Fungal Cellobiohydrolase I Genes from Sporocarps and Forest Soils by PCR

(2008) I. P. Edwards et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Degradation of cellulose by the major endoglucanase produced from the brown-rot fungus Fomitopsis pinicola

(2008) Jeong-Jun Yoon et al.   BIOTECHNOLOGY LETTERS

Rates of litter decomposition in terrestrial ecosystems: global patterns and controlling factors

(2008) Deqiang Zhang et al.   Journal of Plant Ecology

Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers

(2008) Leho Tedersoo et al.   NEW PHYTOLOGIST

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

(2008) Tim Urich et al.   PLoS One

Spatial variability of enzyme activities and microbial biomass in the upper layers of Quercus petraea forest soil

(2008) Jaroslav Šnajdr et al.   SOIL BIOLOGY & BIOCHEMISTRY