CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding
出版年份 2014 全文链接
标题
CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding
作者
关键词
-
出版物
PLoS One
Volume 9, Issue 1, Pages e86869
出版商
Public Library of Science (PLoS)
发表日期
2014-01-23
DOI
10.1371/journal.pone.0086869
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner
- (2013) Ruibang Luo et al. PLoS One
- CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform
- (2012) Yongchao Liu et al. BIOINFORMATICS
- Long read alignment based on maximal exact match seeds
- (2012) Yongchao Liu et al. BIOINFORMATICS
- Fast and accurate read alignment for resequencing
- (2012) John C. Mu et al. BIOINFORMATICS
- SOAP3: ultra-fast GPU-based parallel alignment tool for short reads
- (2012) C.-M. Liu et al. BIOINFORMATICS
- The GEM mapper: fast, accurate and versatile alignment by filtration
- (2012) Santiago Marco-Sola et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- SHRiMP2: Sensitive yet Practical Short Read Mapping
- (2011) Matei David et al. BIOINFORMATICS
- ART: a next-generation sequencing read simulator
- (2011) Weichun Huang et al. BIOINFORMATICS
- GASSST: global alignment short sequence search tool
- (2010) Guillaume Rizk et al. BIOINFORMATICS
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- BFAST: An Alignment Tool for Large Scale Genome Resequencing
- (2009) Nils Homer et al. PLoS One
- Using quality scores and longer reads improves accuracy of Solexa read mapping
- (2008) Andrew D Smith et al. BMC BIOINFORMATICS
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