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(2012) Saiful Islam et al.   Nature Protocols

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Detection of ultra-rare mutations by next-generation sequencing

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Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes

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Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

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Tumour evolution inferred by single-cell sequencing

(2011) Nicholas Navin et al.   NATURE

Counting absolute numbers of molecules using unique molecular identifiers

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A method for counting PCR template molecules with application to next-generation sequencing

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Incorporation of non-natural nucleotides into template-switching oligonucleotides reduces background and improves cDNA synthesis from very small RNA samples

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Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan

(2010) Charles Plessy et al.   NATURE METHODS

RNA sequencing: advances, challenges and opportunities

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Increased Throughput by Parallelization of Library Preparation for Massive Sequencing

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A guide for in-house design of template-switch-based 5′ rapid amplification of cDNA ends systems

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3′ End Processing of a Long Nuclear-Retained Noncoding RNA Yields a tRNA-like Cytoplasmic RNA

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Stem cell transcriptome profiling via massive-scale mRNA sequencing

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RNA-Seq: a revolutionary tool for transcriptomics

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