FusionFinder: A Software Tool to Identify Expressed Gene Fusion Candidates from RNA-Seq Data
出版年份 2012 全文链接
标题
FusionFinder: A Software Tool to Identify Expressed Gene Fusion Candidates from RNA-Seq Data
作者
关键词
-
出版物
PLoS One
Volume 7, Issue 6, Pages e39987
出版商
Public Library of Science (PLoS)
发表日期
2012-06-28
DOI
10.1371/journal.pone.0039987
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- FusionHunter: identifying fusion transcripts in cancer using paired-end RNA-seq
- (2011) Yang Li et al. BIOINFORMATICS
- Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples
- (2011) Serban Nacu et al. BMC Medical Genomics
- Transcriptional consequences of genomic structural aberrations in breast cancer
- (2011) K. Inaki et al. GENOME RESEARCH
- deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data
- (2011) Andrew McPherson et al. PLoS Computational Biology
- Identification of fusion genes in breast cancer by paired-end RNA-sequencing
- (2011) Henrik Edgren et al. GENOME BIOLOGY
- TopHat-Fusion: an algorithm for discovery of novel fusion transcripts
- (2011) Daehwan Kim et al. GENOME BIOLOGY
- Brick1 Is an Essential Regulator of Actin Cytoskeleton Required for Embryonic Development and Cell Transformation
- (2010) B. Escobar et al. CANCER RESEARCH
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Ensembl 2011
- (2010) P. Flicek et al. NUCLEIC ACIDS RESEARCH
- FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data
- (2010) Andrea Sboner et al. GENOME BIOLOGY
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Transcriptome sequencing to detect gene fusions in cancer
- (2009) Christopher A. Maher et al. NATURE
- Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line
- (2009) Qi Zhao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Chimeric transcript discovery by paired-end transcriptome sequencing
- (2009) C. A. Maher et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts
- (2009) Joshua Z Levin et al. GENOME BIOLOGY
- A large genome center's improvements to the Illumina sequencing system
- (2008) Michael A Quail et al. NATURE METHODS
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now