Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals

Unexpected complexity of the Reef-Building Coral Acropora millepora transcription factor network

(2011) Taewoo Ryu et al.   BMC Systems Biology

Differential sensitivity of coral larvae to natural levels of ultraviolet radiation during the onset of larval competence

(2011) MANUEL ARANDA et al.   MOLECULAR ECOLOGY

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Protein synthesis is the primary target of reactive oxygen species in the photoinhibition of photosystem II

(2011) Yoshitaka Nishiyama et al.   PHYSIOLOGIA PLANTARUM

Rapid Evolution of Coral Proteins Responsible for Interaction with the Environment

(2011) Christian R. Voolstra et al.   PLoS One

Identification of Fast-Evolving Genes in the Scleractinian Coral Acropora Using Comparative EST Analysis

(2011) Akira Iguchi et al.   PLoS One

Genomic understanding of dinoflagellates

(2011) Senjie Lin   RESEARCH IN MICROBIOLOGY

Eukaryotic cold shock domain proteins: highly versatile regulators of gene expression

(2010) Marija Mihailovich et al.   BIOESSAYS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Genomic Survey of Candidate Stress-Response Genes in the Estuarine Anemone Nematostella vectensis

(2010) Adam M. Reitzel et al.   BIOLOGICAL BULLETIN

Profiling Differential Gene Expression of Symbiotic and Aposymbiotic Corals Using a High Coverage Gene Expression Profiling (HiCEP) Analysis

(2010) Ikuko Yuyama et al.   MARINE BIOTECHNOLOGY

Development and heat stress-induced transcriptomic changes during embryogenesis of the scleractinian coral Acropora palmata

(2010) Kevin J. Portune et al.   Marine Genomics

Coral larvae exhibit few measurable transcriptional changes during the onset of coral-dinoflagellate endosymbiosis

(2010) Christine E. Schnitzler et al.   Marine Genomics

The Apicomplexan AP2 family: Integral factors regulating Plasmodium development

(2010) Heather J. Painter et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Dynamics of Actin Evolution in Dinoflagellates

(2010) Sunju Kim et al.   MOLECULAR BIOLOGY AND EVOLUTION

Coral host transcriptomic states are correlated withSymbiodiniumgenotypes

(2010) M. K. DeSALVO et al.   MOLECULAR ECOLOGY

A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i

(2010) Xavier Pochon et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Novel Regulators in Photosynthetic Redox Control of Plant Metabolism and Gene Expression

(2010) K.-J. Dietz et al.   PLANT PHYSIOLOGY

Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants

(2010) Sarvajeet Singh Gill et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Transcriptome Profiling of a Toxic Dinoflagellate Reveals a Gene-Rich Protist and a Potential Impact on Gene Expression Due to Bacterial Presence

(2010) Ahmed Moustafa et al.   PLoS One

Spliced leader-based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates

(2010) S. Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont

(2009) Shinichi Sunagawa et al.   BMC GENOMICS

In silicoanalysis of nickel containing superoxide dismutase evolution and regulation

(2009) Astrid Schmidt et al.   JOURNAL OF BASIC MICROBIOLOGY

Histone Chaperones ASF1 and NAP1 Differentially Modulate Removal of Active Histone Marks by LID-RPD3 Complexes during NOTCH Silencing

(2009) Yuri M. Moshkin et al.   MOLECULAR CELL

The host transcriptome remains unaltered during the establishment of coral-algal symbioses

(2009) CHRISTIAN R. VOOLSTRA et al.   MOLECULAR ECOLOGY

Comparative Genomic Study of the Thioredoxin Family in Photosynthetic Organisms with Emphasis on Populus trichocarpa

(2009) Kamel Chibani et al.   Molecular Plant

BioMart Central Portal—unified access to biological data

(2009) Syed Haider et al.   NUCLEIC ACIDS RESEARCH

Distinct Gene Number-Genome Size Relationships for Eukaryotes and Non-Eukaryotes: Gene Content Estimation for Dinoflagellate Genomes

(2009) Yubo Hou et al.   PLoS One

Selection on Codon Bias

(2008) Ruth Hershberg et al.   Annual Review of Genetics

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

(2008) T. N. Mavrich et al.   GENOME RESEARCH

Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis

(2008) V. M. Weis   JOURNAL OF EXPERIMENTAL BIOLOGY

Early Evolution of Histone Genes: Prevalence of an ‘Orphon’ H1 Lineage in Protostomes and Birth-and-Death Process in the H2A Family

(2008) Rodrigo González-Romero et al.   JOURNAL OF MOLECULAR EVOLUTION

Differential gene expression during thermal stress and bleaching in the Caribbean coralMontastraea faveolata

(2008) M. K. DESALVO et al.   MOLECULAR ECOLOGY

Nucleosome organization in the Drosophila genome

(2008) Travis N. Mavrich et al.   NATURE

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

(2008) Daniel Zilberman et al.   NATURE

Horizontal gene transfer in eukaryotic evolution

(2008) Patrick J. Keeling et al.   NATURE REVIEWS GENETICS

PlasmoDB: a functional genomic database for malaria parasites

(2008) C. Aurrecoechea et al.   NUCLEIC ACIDS RESEARCH

Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes

(2007) Lakshminarayan M. Iyer et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY