Predicting the Impact of Alternative Splicing on Plant MADS Domain Protein Function

Cytoscape 2.8: new features for data integration and network visualization

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Internal and External Paralogy in the Evolution of Tropomyosin Genes in Metazoans

(2010) M. Irimia et al.   MOLECULAR BIOLOGY AND EVOLUTION

Extensive Divergence in Alternative Splicing Patterns after Gene and Genome Duplication During the Evolutionary History of Arabidopsis

(2010) P. G. Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control

(2010) Yuling Jiao et al.   Molecular Systems Biology

Expansion of the eukaryotic proteome by alternative splicing

(2010) Timothy W. Nilsen et al.   NATURE

Analysis and design of RNA sequencing experiments for identifying isoform regulation

(2010) Yarden Katz et al.   NATURE METHODS

Alternative splicing and evolution: diversification, exon definition and function

(2010) Hadas Keren et al.   NATURE REVIEWS GENETICS

Single amino acid change alters the ability to specify male or female organ identity

(2010) C. A. Airoldi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein Interaction

(2010) Aalt D. J. van Dijk et al.   PLoS Computational Biology

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome

(2009) Edouard I Severing et al.   BMC GENOMICS

Splicing Variation at a FLOWERING LOCUS C Homeolog Is Associated With Flowering Time Variation in the Tetraploid Capsella bursa-pastoris

(2009) T. Slotte et al.   GENETICS

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

A naturally occurring splicing site mutation in the Brassica rapa FLC1 gene is associated with variation in flowering time

(2009) Yu-Xiang Yuan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Complex Rearrangements Lead to Novel Chimeric Gene Fusion Polymorphisms at the Arabidopsis thaliana MAF2-5 Flowering Time Gene Cluster

(2009) A. L. Caicedo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structural implication of splicing stochastics

(2009) E. Melamud et al.   NUCLEIC ACIDS RESEARCH

PtFLC homolog from trifoliate orange (Poncirus trifoliata) is regulated by alternative splicing and experiences seasonal fluctuation in expression level

(2009) Jin-Zhi Zhang et al.   PLANTA

The ‘ABC’ of MADS domain protein behaviour and interactions

(2009) Richard G.H. Immink et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Floral organ identity: 20 years of ABCs

(2009) Barry Causier et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

SEPALLATA3: the 'glue' for MADS box transcription factor complex formation

(2009) Richard GH Immink et al.   GENOME BIOLOGY

Cross-species EST alignments reveal novel and conserved alternative splicing events in legumes

(2008) Bing-Bing Wang et al.   BMC PLANT BIOLOGY

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

(2008) S. Kumar et al.   BRIEFINGS IN BIOINFORMATICS

A Repressor Complex Governs the Integration of Flowering Signals in Arabidopsis

(2008) Dan Li et al.   DEVELOPMENTAL CELL

Genome-wide analyses of alternative splicing in plants: Opportunities and challenges

(2008) W. B. Barbazuk et al.   GENOME RESEARCH

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

Characterization and comparison of intron structure and alternative splicing between Medicago truncatula, Populus trichocarpa, Arabidopsis and rice

(2008) Jong-Min Baek et al.   PLANT MOLECULAR BIOLOGY

Choose your partners: dimerization in eukaryotic transcription factors

(2008) Grigoris D. Amoutzias et al.   TRENDS IN BIOCHEMICAL SCIENCES

A transcriptional repression motif in the MADS factor AGL15 is involved in recruitment of histone deacetylase complex components

(2007) Kristine Hill et al.   PLANT JOURNAL