Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein Interaction

Just say no: floral repressors help Arabidopsis bide the time

(2009) Levi Yant et al.   CURRENT OPINION IN PLANT BIOLOGY

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

Design of protein-interaction specificity gives selective bZIP-binding peptides

(2009) Gevorg Grigoryan et al.   NATURE

The evolution of hierarchical gene regulatory networks

(2009) Douglas H. Erwin et al.   NATURE REVIEWS GENETICS

Following evolutionary paths to protein-protein interactions with high affinity and selectivity

(2009) Kalia Bernath Levin et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Using genome-wide measurements for computational prediction of SH2–peptide interactions

(2009) Zeba Wunderlich et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Mimicking the folding pathway to improve homology-free protein structure prediction

(2009) J. DeBartolo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Generalized ensemble methods for de novo structure prediction

(2009) A. Shmygelska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The ‘ABC’ of MADS domain protein behaviour and interactions

(2009) Richard G.H. Immink et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Floral organ identity: 20 years of ABCs

(2009) Barry Causier et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the Arabidopsis Flower

(2009) Kerstin Kaufmann et al.   PLOS BIOLOGY

SEPALLATA3: the 'glue' for MADS box transcription factor complex formation

(2009) Richard GH Immink et al.   GENOME BIOLOGY

The 1001 Genomes Project for Arabidopsis thaliana

(2009) Detlef Weigel et al.   GENOME BIOLOGY

Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species

(2008) Oliver Keller et al.   BMC BIOINFORMATICS

Rewiring the Specificity of Two-Component Signal Transduction Systems

(2008) Jeffrey M. Skerker et al.   CELL

A Repressor Complex Governs the Integration of Flowering Signals in Arabidopsis

(2008) Dan Li et al.   DEVELOPMENTAL CELL

Accurate prediction of protein–protein interactions from sequence alignments using a Bayesian method

(2008) Lukas Burger et al.   Molecular Systems Biology

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

(2008) Ray Ming et al.   NATURE

Predicting PDZ domain–peptide interactions from primary sequences

(2008) Jiunn R Chen et al.   NATURE BIOTECHNOLOGY

Identification of direct residue contacts in protein-protein interaction by message passing

(2008) M. Weigt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Built-in loops allow versatility in domain-domain interactions: Lessons from self-interacting domains

(2008) E. Akiva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Choose your partners: dimerization in eukaryotic transcription factors

(2008) Grigoris D. Amoutzias et al.   TRENDS IN BIOCHEMICAL SCIENCES

Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm

(2008) Ignacio E. Sánchez et al.   PLoS Computational Biology