Detecting Remote Sequence Homology in Disordered Proteins: Discovery of Conserved Motifs in the N-Termini of Mononegavirales phosphoproteins

Complete Genome Sequence of a Novel Paramyxovirus, Tailam Virus, Discovered in Sikkim Rats

(2011) P. C. Y. Woo et al.   JOURNAL OF VIROLOGY

Interactome-wide prediction of short, disordered protein interaction motifs in humans

(2011) Richard J. Edwards et al.   Molecular BioSystems

Structural disorder within paramyxovirus nucleoproteins and phosphoproteins

(2011) Johnny Habchi et al.   Molecular BioSystems

A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives

(2011) Julie D. Thompson et al.   PLoS One

Discovery of an Ebolavirus-Like Filovirus in Europe

(2011) Ana Negredo et al.   PLoS Pathogens

Structure of the Vesicular Stomatitis Virus N0-P Complex

(2011) Cédric Leyrat et al.   PLoS Pathogens

Identification of High-Affinity PB1-Derived Peptides with Enhanced Affinity to the PA Protein of Influenza A Virus Polymerase

(2010) Kerstin Wunderlich et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prototypes of elementary functional loops unravel evolutionary connections between protein functions

(2010) Alexander Goncearenco et al.   BIOINFORMATICS

Characterization of the Ebola virus nucleoprotein-RNA complex

(2010) T. Noda et al.   JOURNAL OF GENERAL VIROLOGY

Passaging of a Newcastle disease virus pigeon variant in chickens results in selection of viruses with mutations in the polymerase complex enhancing virus replication and virulence

(2010) J. C. F. M. Dortmans et al.   JOURNAL OF GENERAL VIROLOGY

Access to RNA Encapsidated in the Nucleocapsid of Vesicular Stomatitis Virus

(2010) T. J. Green et al.   JOURNAL OF VIROLOGY

Structure of the Dimerization Domain of the Rabies Virus Phosphoprotein

(2010) I. Ivanov et al.   JOURNAL OF VIROLOGY

Basic Residues within the Ebolavirus VP35 Protein Are Required for Its Viral Polymerase Cofactor Function

(2010) Kathleen C. Prins et al.   JOURNAL OF VIROLOGY

Virus-host protein interactions in RNA viruses

(2010) Pierre-Olivier Vidalain et al.   MICROBES AND INFECTION

Visualization of multiple alignments, phylogenies and gene family evolution

(2010) James B Procter et al.   NATURE METHODS

SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs

(2010) N. E. Davey et al.   NUCLEIC ACIDS RESEARCH

GUIDANCE: a web server for assessing alignment confidence scores

(2010) O. Penn et al.   NUCLEIC ACIDS RESEARCH

Structural Disorder within Henipavirus Nucleoprotein and Phosphoprotein: From Predictions to Experimental Assessment

(2010) Johnny Habchi et al.   PLoS One

Structural Disorder in Proteins of the Rhabdoviridae Replication Complex

(2010) Cedric Leyrat et al.   PROTEIN AND PEPTIDE LETTERS

How viruses hijack cell regulation

(2010) Norman E. Davey et al.   TRENDS IN BIOCHEMICAL SCIENCES

Close encounters of the third kind: disordered domains and the interactions of proteins

(2009) Peter Tompa et al.   BIOESSAYS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Bioinformatical approaches to characterize intrinsically disordered/unstructured proteins

(2009) Z. Dosztanyi et al.   BRIEFINGS IN BIOINFORMATICS

Structural insight into the essential PB1–PB2 subunit contact of the influenza virus RNA polymerase

(2009) Kanako Sugiyama et al.   EMBO JOURNAL

Reassessing conflicting evolutionary histories of the Paramyxoviridae and the origins of respiroviruses with Bayesian multigene phylogenies

(2009) Alex J. McCarthy et al.   INFECTION GENETICS AND EVOLUTION

Genetic Analysis of Paramyxovirus Isolates from Pacific Salmon Reveals Two Independently Co-circulating Lineages

(2009) William N. Batts et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Modular Organization of Rabies Virus Phosphoprotein

(2009) Francine C.A. Gerard et al.   JOURNAL OF MOLECULAR BIOLOGY

Structure of the Nucleoprotein Binding Domain of Mokola Virus Phosphoprotein

(2009) R. Assenberg et al.   JOURNAL OF VIROLOGY

Nyamanini and Midway Viruses Define a Novel Taxon of RNA Viruses in the Order Mononegavirales

(2009) K. A. Mihindukulasuriya et al.   JOURNAL OF VIROLOGY

Peptides That Mimic the Amino-Terminal End of the Rabies Virus Phosphoprotein Have Antiviral Activity

(2009) G. Castel et al.   JOURNAL OF VIROLOGY

Nipah Virus Sequesters Inactive STAT1 in the Nucleus via a P Gene-Encoded Mechanism

(2009) M. J. Ciancanelli et al.   JOURNAL OF VIROLOGY

Comparing Models of Evolution for Ordered and Disordered Proteins

(2009) C. J. Brown et al.   MOLECULAR BIOLOGY AND EVOLUTION

A promiscuous α-helical motif anchors viral hijackers and substrate receptors to the CUL4–DDB1 ubiquitin ligase machinery

(2009) Ti Li et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Ebolavirus VP35 uses a bimodal strategy to bind dsRNA for innate immune suppression

(2009) C. R. Kimberlin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure of the Ebola VP35 interferon inhibitory domain

(2009) D. W. Leung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The rules of disorder or why disorder rules

(2009) Jörg Gsponer et al.   PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY

Modularity of intrinsic disorder in the human proteome

(2009) Melissa M. Pentony et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

RNA induced polymerization of the Borna disease virus nucleoprotein

(2009) Miriam Hock et al.   VIROLOGY

DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

(2008) Amarendran R Subramanian et al.   Algorithms for Molecular Biology

MeDor: a metaserver for predicting protein disorder

(2008) Philippe Lieutaud et al.   BMC GENOMICS

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Understanding eukaryotic linear motifs and their role in cell signaling and regulation

(2008) Francesca Diella   Frontiers in Bioscience-Landmark

Inhibition of interferon induction and signaling by paramyxoviruses

(2008) Judith M. Fontana et al.   IMMUNOLOGICAL REVIEWS

Structure of the Nucleocapsid-Binding Domain from the Mumps Virus Polymerase; an Example of Protein Folding Induced by Crystallization

(2008) Richard L. Kingston et al.   JOURNAL OF MOLECULAR BIOLOGY

Solution Structure of the C-Terminal Nucleoprotein–RNA Binding Domain of the Vesicular Stomatitis Virus Phosphoprotein

(2008) Euripedes A. Ribeiro et al.   JOURNAL OF MOLECULAR BIOLOGY

Crystal structure of the polymerase PAC–PB1N complex from an avian influenza H5N1 virus

(2008) Xiaojing He et al.   NATURE

The structural basis for an essential subunit interaction in influenza virus RNA polymerase

(2008) Eiji Obayashi et al.   NATURE

WAR: Webserver for aligning structural RNAs

(2008) E. Torarinsson et al.   NUCLEIC ACIDS RESEARCH

The Jpred 3 secondary structure prediction server

(2008) C. Cole et al.   NUCLEIC ACIDS RESEARCH

The quest for orthologs: finding the corresponding gene across genomes

(2008) Arnold Kuzniar et al.   TRENDS IN GENETICS