Global transcriptome analysis and identification of a CONSTANS-like gene family in the orchid Erycina pusilla

De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)

(2012) Dejun Li et al.   BMC GENOMICS

Molecular characterization and expression profiles of MaCOL1, a CONSTANS-like gene in banana fruit

(2012) Jiao Chen et al.   GENE

De novo assembly and characterization of the garlic (Allium sativum) bud transcriptome by Illumina sequencing

(2012) Xiudong Sun et al.   PLANT CELL REPORTS

Potato CONSTANS is involved in photoperiodic tuberization in a graft-transmissible manner

(2012) Nahuel D. González-Schain et al.   PLANT JOURNAL

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Complete Chloroplast Genome Sequence of an Orchid Model Plant Candidate: Erycina pusilla Apply in Tropical Oncidium Breeding

(2012) I-Chun Pan et al.   PLoS One

De novo characterization of the root transcriptome of a traditional Chinese medicinal plant Polygonum cuspidatum

(2012) DaCheng Hao et al.   Science China-Life Sciences

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

(2011) S Samuel Yang et al.   BMC GENOMICS

De novo sequence assembly and characterization of the floral transcriptome in cross- and self-fertilizing plants

(2011) Rob W Ness et al.   BMC GENOMICS

Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

(2011) Cheng-Ying Shi et al.   BMC GENOMICS

Integration of molecular biology tools for identifying promoters and genes abundantly expressed in flowers of Oncidium Gower Ramsey

(2011) Chen-Tran Hsu et al.   BMC PLANT BIOLOGY

CONSTANS and the evolutionary origin of photoperiodic timing of flowering

(2011) F. Valverde   JOURNAL OF EXPERIMENTAL BOTANY

The differential expression of HvCO9, a member of the CONSTANS-like gene family, contributes to the control of flowering under short-day conditions in barley

(2011) Rie Kikuchi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

OrchidBase: A Collection of Sequences of the Transcriptome Derived from Orchids

(2011) C.-H. Fu et al.   PLANT AND CELL PHYSIOLOGY

De Novo Assembly of Expressed Transcripts and Global Analysis of the Phalaenopsis aphrodite Transcriptome

(2011) Chun-lin Su et al.   PLANT AND CELL PHYSIOLOGY

Research on Orchid Biology and Biotechnology

(2011) Y.-Y. Hsiao et al.   PLANT AND CELL PHYSIOLOGY

Characterization of Oncidium ‘Gower Ramsey’ Transcriptomes using 454 GS-FLX Pyrosequencing and Their Application to the Identification of Genes Associated with Flowering Time

(2011) Yu-Yun Chang et al.   PLANT AND CELL PHYSIOLOGY

Functional characterisation of HvCO1, the barley (Hordeum vulgare) flowering time ortholog of CONSTANS

(2011) Chiara Campoli et al.   PLANT JOURNAL

In the Light of Evolution: A Reevaluation of Conservation in the CO?FT Regulon and Its Role in Photoperiodic Regulation of Flowering Time

(2011) Evangeline S. Ballerini et al.   Frontiers in Plant Science

Cloning and characterization of a novel CONSTANS-like gene from Phalaenopsis hybrida

(2010) Jian-Xia Zhang et al.   ACTA PHYSIOLOGIAE PLANTARUM

Reticulate evolution in diploid and tetraploid species of Polystachya (Orchidaceae) as shown by plastid DNA sequences and low-copy nuclear genes

(2010) Anton Russell et al.   ANNALS OF BOTANY

Hybridization and introgression across different ploidy levels in the Neotropical orchids Epidendrum fulgens and E. puniceoluteum (Orchidaceae)

(2010) FÁBIO PINHEIRO et al.   MOLECULAR ECOLOGY

C/D Class MADS Box Genes from Two Monocots, Orchid (Oncidium Gower Ramsey) and Lily (Lilium longiflorum), Exhibit Different Effects on Floral Transition and Formation in Arabidopsis thaliana

(2010) H.-F. Hsu et al.   PLANT AND CELL PHYSIOLOGY

Seasonal and developmental timing of flowering

(2010) Richard Amasino   PLANT JOURNAL

High throughput DNA sequencing: The new sequencing revolution

(2010) Michel Delseny et al.   PLANT SCIENCE

Comparison of next generation sequencing technologies for transcriptome characterization

(2009) P Kerr Wall et al.   BMC GENOMICS

Rapid identification of the three homoeologues of the wheat dwarfing gene Rht using a novel PCR-based screen of three-dimensional BAC pools

(2009) Melanie Febrer et al.   GENOME

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Four Orchid (Oncidium Gower Ramsey) AP1/AGL9-like MADS Box Genes Show Novel Expression Patterns and Cause Different Effects on Floral Transition and Formation in Arabidopsis thaliana

(2009) Yu-Yun Chang et al.   PLANT AND CELL PHYSIOLOGY

Functional Analysis of FT and TFL1 Orthologs from Orchid (Oncidium Gower Ramsey) that Regulate the Vegetative to Reproductive Transition

(2009) C.-J. Hou et al.   PLANT AND CELL PHYSIOLOGY

The Arabidopsis B-Box Zinc Finger Family

(2009) R. Khanna et al.   PLANT CELL

Ectopic expression of two MADS box genes from orchid (Oncidium Gower Ramsey) and lily (Lilium longiflorum) alters flower transition and formation in Eustoma grandiflorum

(2009) Muthu Thiruvengadam et al.   PLANT CELL REPORTS

Characterization of the Possible Roles for B Class MADS Box Genes in Regulation of Perianth Formation in Orchid

(2009) Y.-Y. Chang et al.   PLANT PHYSIOLOGY

Next-Generation DNA Sequencing Methods

(2008) Elaine R. Mardis   Annual Review of Genomics and Human Genetics

Regulation and Identity of Florigen: FLOWERING LOCUS T Moves Center Stage

(2008) Franziska Turck et al.   Annual Review of Plant Biology

Applications of next-generation sequencing technologies in functional genomics

(2008) Olena Morozova et al.   GENOMICS

Sugar beet contains a large CONSTANS-LIKE gene family including a CO homologue that is independent of the early-bolting (B) gene locus

(2008) T. Y. P. Chia et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genetic integrity of sympatric hybridising plant species: the case ofOrchis italicaandO. anthropophora

(2008) G. Pellegrino et al.   PLANT BIOLOGY

Identification of PaCOL1 and PaCOL2, two CONSTANS-like genes showing decreased transcript levels preceding short day induced growth cessation in Norway spruce

(2008) Anna Holefors et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY