Genome diversity inBrachypodium distachyon:deep sequencing of highly diverse inbred lines

Selection and phenotypic characterization of a core collection of Brachypodium distachyon inbred lines

(2014) Ludmila Tyler et al.   BMC PLANT BIOLOGY

Overexpression of the Trehalase Gene AtTRE1 Leads to Increased Drought Stress Tolerance in Arabidopsis and Is Involved in Abscisic Acid-Induced Stomatal Closure

(2013) H. Van Houtte et al.   PLANT PHYSIOLOGY

Infection of Brachypodium distachyon by Formae Speciales of Puccinia graminis: Early Infection Events and Host-Pathogen Incompatibility

(2013) Melania Figueroa et al.   PLoS One

Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes

(2012) Sergei A Filichkin et al.   Biology Direct

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes

(2012) L. K. McHale et al.   PLANT PHYSIOLOGY

Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon

(2012) Yu Cui et al.   PLoS One

Generation and Characterization of the Western Regional Research Center Brachypodium T-DNA Insertional Mutant Collection

(2012) Jennifer N. Bragg et al.   PLoS One

CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

(2011) A. Abyzov et al.   GENOME RESEARCH

On the Increased Frequency of Mediterranean Drought

(2011) Martin Hoerling et al.   JOURNAL OF CLIMATE

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

(2011) Xiangchao Gan et al.   NATURE

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

(2011) Xun Xu et al.   NATURE BIOTECHNOLOGY

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

Exploiting the Brachypodium Tool Box in cereal and grass research

(2011) Luis A. J. Mur et al.   NEW PHYTOLOGIST

Environmental aridity is associated with cytotype segregation and polyploidy occurrence in Brachypodium distachyon (Poaceae)

(2011) Antonio J. Manzaneda et al.   NEW PHYTOLOGIST

Brachypodium as a Model for the Grasses: Today and the Future

(2011) Jelena Brkljacic et al.   PLANT PHYSIOLOGY

Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula

(2011) A. Branca et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reference-guided assembly of four diverse Arabidopsis thaliana genomes

(2011) K. Schneeberger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

(2011) Daniel Aird et al.   GENOME BIOLOGY

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

(2010) Jeffrey Martin et al.   BMC GENOMICS

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Natural variation of drought response in Brachypodium distachyon

(2010) Na Luo et al.   PHYSIOLOGIA PLANTARUM

Overexpression of AtABCG36 improves drought and salt stress resistance in Arabidopsis

(2010) Do-Young Kim et al.   PHYSIOLOGIA PLANTARUM

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

(2009) K. Ye et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon

(2009) John P Vogel et al.   BMC PLANT BIOLOGY

Advances in Genetical Genomics of Plants

(2009) R. Joosen et al.   CURRENT GENOMICS

Molecular, morphological, and cytological analysis of diverse Brachypodium distachyon inbred lines

(2009) E. Filiz et al.   GENOME

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

(2009) Ken Chen et al.   NATURE METHODS

A First-Generation Haplotype Map of Maize

(2009) M. A. Gore et al.   SCIENCE

Sequencing of natural strains of Arabidopsis thaliana with short reads

(2008) S. Ossowski et al.   GENOME RESEARCH