RNA-Seq transcriptome analysis to identify genes involved in metabolism-based diclofop resistance inLolium rigidum

Contribution of cytochrome P450 to the diversification of eukaryotic organisms

(2013) Tsuneo Omura   BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY

Enhanced herbicide metabolism induced by 2,4-D in herbicide susceptibleLolium rigidumprovides protection against diclofop-methyl

(2013) Heping Han et al.   PEST MANAGEMENT SCIENCE

Cytochrome P450 genes induced by bispyribac-sodium treatment in a multiple-herbicide-resistant biotype ofEchinochloa phyllopogon

(2013) Satoshi Iwakami et al.   PEST MANAGEMENT SCIENCE

A Rice cis-Natural Antisense RNA Acts as a Translational Enhancer for Its Cognate mRNA and Contributes to Phosphate Homeostasis and Plant Fitness

(2013) M. Jabnoune et al.   PLANT CELL

Transcriptomic analysis of rice (Oryza sativa) endosperm using the RNA-Seq technique

(2013) Yi Gao et al.   PLANT MOLECULAR BIOLOGY

Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination

(2013) W.-Y. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Key role for a glutathione transferase in multiple-herbicide resistance in grass weeds

(2013) I. Cummins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A novel activity for fungal nitronate monooxygenase: Detoxification of the metabolic inhibitor propionate-3-nitronate

(2012) Kevin Francis et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Evolved polygenic herbicide resistance inLolium rigidumby low-dose herbicide selection within standing genetic variation

(2012) Roberto Busi et al.   Evolutionary Applications

Transcriptional biomarkers – High throughput screening, quantitative verification, and bioinformatical validation methods

(2012) Irmgard Riedmaier et al.   METHODS

Management of an ACCase-inhibitor-resistantLolium rigidumpopulation based on the use of ALS inhibitors: weed population evolution observed over a 7 year field-scale investigation

(2012) Alberto Collavo et al.   PEST MANAGEMENT SCIENCE

Enhanced rates of herbicide metabolism in low herbicide-dose selected resistantLolium rigidum

(2012) Q. YU et al.   PLANT CELL AND ENVIRONMENT

An RNA-Seq Transcriptome Analysis of Orthophosphate-Deficient White Lupin Reveals Novel Insights into Phosphorus Acclimation in Plants

(2012) J. A. O'Rourke et al.   PLANT PHYSIOLOGY

Understanding the potential for resistance evolution to the new herbicide pyroxasulfone: field selection at high doses versus recurrent selection at low doses

(2012) R BUSI et al.   WEED RESEARCH

An Herbicide-Susceptible Rigid Ryegrass (Lolium rigidum) Population Made Even More Susceptible

(2012) Sudheesh Manalil et al.   WEED SCIENCE

Transcriptomic analysis of grain amaranth (Amaranthus hypochondriacus) using 454 pyrosequencing: comparison with A. tuberculatus, expression profiling in stems and in response to biotic and abiotic stress

(2011) John P Délano-Frier et al.   BMC GENOMICS

Multiple roles for plant glutathione transferases in xenobiotic detoxification

(2011) Ian Cummins et al.   DRUG METABOLISM REVIEWS

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Drought and Salt Stress Tolerance of an Arabidopsis Glutathione S-Transferase U17 Knockout Mutant Are Attributed to the Combined Effect of Glutathione and Abscisic Acid

(2011) J.-H. Chen et al.   PLANT PHYSIOLOGY

Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants

(2011) R. J. Schmitz et al.   SCIENCE

Rapid Evolution of Herbicide Resistance by Low Herbicide Dosages

(2011) Sudheesh Manalil et al.   WEED SCIENCE

Evolution in Action: Plants Resistant to Herbicides

(2010) Stephen B. Powles et al.   Annual Review of Plant Biology

baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data

(2010) Thomas J Hardcastle et al.   BMC BIOINFORMATICS

Genetic control of a cytochrome P450 metabolism-based herbicide resistance mechanism in Lolium rigidum

(2010) R Busi et al.   HEREDITY

Characterization of the horseweed (Conyza canadensis) transcriptome using GS-FLX 454 pyrosequencing and its application for expression analysis of candidate non-target herbicide resistance genes

(2010) Yanhui Peng et al.   PEST MANAGEMENT SCIENCE

Characterization of de novo transcriptome for waterhemp (Amaranthus tuberculatus) using GS-FLX 454 pyrosequencing and its application for studies of herbicide target-site genes

(2010) Chance W Riggins et al.   PEST MANAGEMENT SCIENCE

A Glutathione S-Transferase Regulated by Light and Hormones Participates in the Modulation of Arabidopsis Seedling Development

(2010) H.-W. Jiang et al.   PLANT PHYSIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Nitronate monooxygenase, a model for anionic flavin semiquinone intermediates in oxidative catalysis

(2009) Giovanni Gadda et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond

(2009) Ryan Lister et al.   CURRENT OPINION IN PLANT BIOLOGY

Evolutionary-thinking in agricultural weed management

(2009) Paul Neve et al.   NEW PHYTOLOGIST

Gene amplification confers glyphosate resistance in Amaranthus palmeri

(2009) T. A. Gaines et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Applications of next-generation sequencing technologies in functional genomics

(2008) Olena Morozova et al.   GENOMICS

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

Detoxification of the explosive 2,4,6-trinitrotoluene in Arabidopsis: discovery of bifunctionalO- andC-glucosyltransferases

(2008) Fernando Gandia-Herrero et al.   PLANT JOURNAL