Transcriptomic analysis of rice (Oryza sativa) endosperm using the RNA-Seq technique

The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight

(2012) Juan Li et al.   PLoS One

Genome-Wide Analysis of the Complex Transcriptional Networks of Rice Developing Seeds

(2012) Liang-Jiao Xue et al.   PLoS One

Transcriptomic Analysis of Rice (Oryza sativa) Developing Embryos Using the RNA-Seq Technique

(2012) Hong Xu et al.   PLoS One

Transcriptome analysis of grain-filling caryopses reveals involvement of multiple regulatory pathways in chalky grain formation in rice

(2011) Xiaolu Liu et al.   BMC GENOMICS

Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars

(2011) R C Venu et al.   BMC GENOMICS

A Novel Protein RLS1 with NB–ARM Domains Is Involved in Chloroplast Degradation during Leaf Senescence in Rice

(2011) Bin-Bin Jiao et al.   Molecular Plant

Rice APOPTOSIS INHIBITOR5 Coupled with Two DEAD-Box Adenosine 5′-Triphosphate-Dependent RNA Helicases Regulates Tapetum Degeneration

(2011) Xingwang Li et al.   PLANT CELL

RNA-seq discovery, functional characterization, and comparison of sesquiterpene synthases from Solanum lycopersicum and Solanum habrochaites trichomes

(2011) Petra M. Bleeker et al.   PLANT MOLECULAR BIOLOGY

A Plant-Specific Transcription Factor IIB-Related Protein, pBRP2, Is Involved in Endosperm Growth Control

(2011) Emilie Cavel et al.   PLoS One

Constitutive Overexpression of the OsNAS Gene Family Reveals Single-Gene Strategies for Effective Iron- and Zinc-Biofortification of Rice Endosperm

(2011) Alexander A. T. Johnson et al.   PLoS One

A Genome-Wide Survey of Imprinted Genes in Rice Seeds Reveals Imprinting Primarily Occurs in the Endosperm

(2011) Ming Luo et al.   PLoS Genetics

Over-expression of mitochondrial heat shock protein 70 suppresses programmed cell death in rice

(2010) Yaocheng Qi et al.   FEBS LETTERS

Haem oxygenase delays programmed cell death in wheat aleurone layers by modulation of hydrogen peroxide metabolism

(2010) Mingzhu Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional profiling and in silico analysis of Dof transcription factor gene family for understanding their regulation during seed development of rice Oryza sativa L.

(2010) Vikram Singh Gaur et al.   MOLECULAR BIOLOGY REPORTS

Environmentally induced programmed cell death in leaf protoplasts of Aponogeton madagascariensis

(2010) Christina E. N. Lord et al.   PLANTA

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species

(2009) Diana Bellin et al.   BMC GENOMICS

RNA-seq: from technology to biology

(2009) Samuel Marguerat et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond

(2009) Ryan Lister et al.   CURRENT OPINION IN PLANT BIOLOGY

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Mitochondrial proteome during salt stress-induced programmed cell death in rice

(2009) Xi Chen et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Down-regulation of the OsPDCD5 gene induced photoperiod-sensitive male sterility in rice

(2009) Yufeng Wang et al.   PLANT SCIENCE

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data

(2009) Piotr J Balwierz et al.   GENOME BIOLOGY

OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress

(2008) D. Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Dynamic Proteomic Analysis Reveals a Switch between Central Carbon Metabolism and Alcoholic Fermentation in Rice Filling Grains

(2008) S. B. Xu et al.   PLANT PHYSIOLOGY