Back to the basics: The need for ecophysiological insights to enhance our understanding of microbial behaviour in the rhizosphere

Phenotypic Switching in Pseudomonas brassicacearum Involves GacS- and GacA-Dependent Rsm Small RNAs

(2012) David Lalaouna et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ecosystem processes and interactions in a morass of diversity

(2012) James I. Prosser   FEMS MICROBIOLOGY ECOLOGY

Modeling microbial community structure and functional diversity across time and space

(2012) Peter E. Larsen et al.   FEMS MICROBIOLOGY LETTERS

Growing Unculturable Bacteria

(2012) E. J. Stewart   JOURNAL OF BACTERIOLOGY

Draft Genome Sequence of the Antagonistic Rhizosphere Bacterium Serratia plymuthica Strain PRI-2C

(2012) P. Garbeva et al.   JOURNAL OF BACTERIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Predicting bacterial community assemblages using an artificial neural network approach

(2012) Peter E Larsen et al.   NATURE METHODS

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Benzoxazinoids in Root Exudates of Maize Attract Pseudomonas putida to the Rhizosphere

(2012) Andrew L. Neal et al.   PLoS One

Mass spectral molecular networking of living microbial colonies

(2012) J. Watrous et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional genomics analysis of plant growth-promoting rhizobacterial traits involved in rhizosphere competence

(2011) Matthieu Barret et al.   BIOLOGY AND FERTILITY OF SOILS

New trends in fluorescence in situ hybridization for identification and functional analyses of microbes

(2011) Michael Wagner et al.   CURRENT OPINION IN BIOTECHNOLOGY

Rice root-associated bacteria: insights into community structures across 10 cultivars

(2011) Pablo Rodrigo Hardoim et al.   FEMS MICROBIOLOGY ECOLOGY

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Transcriptional and antagonistic responses of Pseudomonas fluorescens Pf0-1 to phylogenetically different bacterial competitors

(2011) Paolina Garbeva et al.   ISME Journal

Antibiotic research in the age of omics: from expression profiles to interspecies communication

(2011) T. Wecke et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Tracing the Domestication of a Biofilm-Forming Bacterium

(2011) A. L. McLoon et al.   JOURNAL OF BACTERIOLOGY

Just-in-Time Control of Spo0A Synthesis in Bacillus subtilis by Multiple Regulatory Mechanisms

(2011) Arnaud Chastanet et al.   JOURNAL OF BACTERIOLOGY

Methanol metabolism of the rhizosphere phytosymbiont Methylobacterium nodulans

(2011) E. N. Kaparullina et al.   MICROBIOLOGY

Genome of a Low-Salinity Ammonia-Oxidizing Archaeon Determined by Single-Cell and Metagenomic Analysis

(2011) Paul C. Blainey et al.   PLoS One

Bacterial Distribution in the Rhizosphere of Wild Barley under Contrasting Microclimates

(2011) Salme Timmusk et al.   PLoS One

Comparative Analysis of Bacterial Communities in a Potato Field as Determined by Pyrosequencing

(2011) Özgül İnceoğlu et al.   PLoS One

Mutually facilitated dispersal between the nonmotile fungus Aspergillus fumigatus and the swarming bacterium Paenibacillus vortex

(2011) C. J. Ingham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interspecies interactions that result in Bacillus subtilis forming biofilms are mediated mainly by members of its own genus

(2011) E. A. Shank et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effect of bacterial inoculation, plant genotype and developmental stage on root-associated and endophytic bacterial communities in potato (Solanum tuberosum)

(2010) Fernando Dini Andreote et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

GacA-Controlled Activation of Promoters for Small RNA Genes in Pseudomonas fluorescens

(2010) B. Humair et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A review of molecular methods to study the microbiota of soil and the mycosphere

(2010) J.D. van Elsas et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Fixation-free fluorescence in situ hybridization for targeted enrichment of microbial populations

(2010) Suzan Yilmaz et al.   ISME Journal

Bacterial soil community in a Brazilian sugarcane field

(2010) Francisco Dini-Andreote et al.   PLANT AND SOIL

Single-Cell Ecophysiology of Microbes as Revealed by Raman Microspectroscopy or Secondary Ion Mass Spectrometry Imaging

(2009) Michael Wagner   Annual Review of Microbiology

Interspecies Chemical Communication in Bacterial Development

(2009) Paul D. Straight et al.   Annual Review of Microbiology

New developments in microbial interspecies signaling

(2009) Elizabeth Anne Shank et al.   CURRENT OPINION IN MICROBIOLOGY

Whole-genome microarray analyses ofSynechococcus-Vibriointeractions

(2009) Vera Tai et al.   ENVIRONMENTAL MICROBIOLOGY

Exploration of hitherto-uncultured bacteria from the rhizosphere

(2009) Ulisses Nunes da Rocha et al.   FEMS MICROBIOLOGY ECOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Adaptive Divergence in Experimental Populations of Pseudomonas fluorescens. IV. Genetic Constraints Guide Evolutionary Trajectories in a Parallel Adaptive Radiation

(2009) M. J. McDonald et al.   GENETICS

Influence of Arabidopsis thaliana accessions on rhizobacterial communities and natural variation in root exudates

(2009) Shirley A. Micallef et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cultivation of hitherto-uncultured bacteria belonging to the Verrucomicrobia subdivision 1 from the potato (Solanum tuberosum L.) rhizosphere

(2009) Ulisses Nunes da Rocha et al.   JOURNAL OF SOILS AND SEDIMENTS

Inter-specific Interactions Between Carbon-limited Soil Bacteria Affect Behavior and Gene Expression

(2009) Paolina Garbeva et al.   MICROBIAL ECOLOGY

TerraGenome: a consortium for the sequencing of a soil metagenome

(2009) Timothy M. Vogel et al.   NATURE REVIEWS MICROBIOLOGY

Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms

(2009) Alan E. Richardson et al.   PLANT AND SOIL

The role of natural environments in the evolution of resistance traits in pathogenic bacteria

(2009) J. L. Martinez   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Community structure of marine bacterioplankton: patterns, networks, and relationships to function

(2008) JA Fuhrman et al.   AQUATIC MICROBIAL ECOLOGY

Effects of plant genotype and growth stage on the structure of bacterial communities associated with potato (Solanum tuberosum L.)

(2008) Leo Van Overbeek et al.   FEMS MICROBIOLOGY ECOLOGY

Culture-Independent Assessment of Rhizobiales-Related Alphaproteobacteria and the Diversity of Methylobacterium in the Rhizosphere and Rhizoplane of Transgenic Eucalyptus

(2008) Fernando Dini Andreote et al.   MICROBIAL ECOLOGY

Interspecies signalling via the Stenotrophomonas maltophilia diffusible signal factor influences biofilm formation and polymyxin tolerance in Pseudomonas aeruginosa

(2008) Robert P. Ryan et al.   MOLECULAR MICROBIOLOGY

Transient heterogeneity in extracellular protease production by Bacillus subtilis

(2008) Jan-Willem Veening et al.   Molecular Systems Biology

Global inputs of biological nitrogen fixation in agricultural systems

(2008) David F. Herridge et al.   PLANT AND SOIL

Bacteria Subsisting on Antibiotics

(2008) G. Dantas et al.   SCIENCE

Antibiotics and Antibiotic Resistance Genes in Natural Environments

(2008) J. L. Martinez   SCIENCE

Bacillus lipopeptides: versatile weapons for plant disease biocontrol

(2008) Marc Ongena et al.   TRENDS IN MICROBIOLOGY

Properties of bacterial endophytes and their proposed role in plant growth

(2008) Pablo R. Hardoim et al.   TRENDS IN MICROBIOLOGY