Genome-wide identification and functional annotation of Plasmodium falciparum long noncoding RNAs from RNA-seq data

Long non-coding RNAs: A new frontier in the study of human diseases

(2013) Xuefei Shi et al.   CANCER LETTERS

De novo reconstruction of the Toxoplasma gondii transcriptome improves on the current genome annotation and reveals alternatively spliced transcripts and putative long non-coding RNAs

(2012) Musa A Hassan et al.   BMC GENOMICS

Long noncoding RNAs in C. elegans

(2012) J.-W. Nam et al.   GENOME RESEARCH

Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade

(2012) Shin-Ichiro Tachibana et al.   NATURE GENETICS

Threonine peptidases as drug targets against malaria

(2011) Serena Tschan et al.   EXPERT OPINION ON THERAPEUTIC TARGETS

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

(2011) M. N. Cabili et al.   GENES & DEVELOPMENT

Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression

(2011) John R Prensner et al.   NATURE BIOTECHNOLOGY

ncFANs: a web server for functional annotation of long non-coding RNAs

(2011) Q. Liao et al.   NUCLEIC ACIDS RESEARCH

Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network

(2011) Qi Liao et al.   NUCLEIC ACIDS RESEARCH

Merozoite release from Plasmodium falciparum-infected erythrocytes involves the transfer of DiIC16 from infected cell membrane to Maurer’s clefts

(2011) Gladys T. Cortés et al.   PARASITOLOGY RESEARCH

Plasmodium falciparum infection-induced changes in erythrocyte membrane proteins

(2011) Albin Fontaine et al.   PARASITOLOGY RESEARCH

A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs

(2011) Kate M Broadbent et al.   GENOME BIOLOGY

New insights into the blood-stage transcriptome ofPlasmodium falciparumusing RNA-Seq

(2010) Thomas D. Otto et al.   MOLECULAR MICROBIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

(2010) Mitchell Guttman et al.   NATURE BIOTECHNOLOGY

Apparent bias for P. falciparum parasites carrying the wild-type pfcrt allele in the placenta

(2010) Nadja Oster et al.   PARASITOLOGY RESEARCH

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Long noncoding RNAs: functional surprises from the RNA world

(2009) J. E. Wilusz et al.   GENES & DEVELOPMENT

A global view of the nonprotein-coding transcriptome in Plasmodium falciparum

(2009) Carsten A. Raabe et al.   NUCLEIC ACIDS RESEARCH

In vitro selection of RNA aptamers against a conserved region of the Plasmodium falciparum erythrocyte membrane protein 1

(2009) Anders Barfod et al.   PARASITOLOGY RESEARCH

Virulence and drug resistance in malaria parasites

(2009) Wilfred D. Stein et al.   TRENDS IN PARASITOLOGY

The role of the Maurer's clefts in protein transport in Plasmodium falciparum

(2009) Tobili Y. Sam-Yellowe   TRENDS IN PARASITOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Deletion of thePlasmodium falciparumMerozoite Surface Protein 7 Gene Impairs Parasite Invasion of Erythrocytes

(2008) Madhusudan Kadekoppala et al.   EUKARYOTIC CELL

Plasmodium falciparum STEVOR Proteins Are Highly Expressed in Patient Isolates and Located in the Surface Membranes of Infected Red Blood Cells and the Apical Tips of Merozoites

(2008) J. E. Blythe et al.   INFECTION AND IMMUNITY

Reticulocyte-binding protein homologue 5 – An essential adhesin involved in invasion of human erythrocytes by Plasmodium falciparum

(2008) Jake Baum et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

The genome of the simian and human malaria parasite Plasmodium knowlesi

(2008) A. Pain et al.   NATURE

PlasmoDB: a functional genomic database for malaria parasites

(2008) C. Aurrecoechea et al.   NUCLEIC ACIDS RESEARCH

Chromatin associated sense and antisense noncoding RNAs are transcribed from the var gene family of virulence genes of the malaria parasite Plasmodium falciparum

(2008) C. Epp et al.   RNA

Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum

(2007) T. Mourier et al.   GENOME RESEARCH