A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs

TERRA, CpG methylation, and telomere heterochromatin: Lessons from ICF syndrome cells

(2011) Zhong Deng et al.   CELL CYCLE

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

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NeatMap - non-clustering heat map alternatives in R

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Long Noncoding RNAs with Enhancer-like Function in Human Cells

(2010) Ulf Andersson Ørom et al.   CELL

RNA traffic control of chromatin complexes

(2010) Magdalena J Koziol et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Epigenetics in Plasmodium: What Do We Really Know? : Fig. 1.

(2010) Catherine J. Merrick et al.   EUKARYOTIC CELL

Chromatin-Mediated Epigenetic Regulation in the Malaria Parasite Plasmodium falciparum

(2010) Liwang Cui et al.   EUKARYOTIC CELL

TERRA biogenesis, turnover and implications for function

(2010) Sascha Feuerhahn et al.   FEBS LETTERS

Nucleosome landscape and control of transcription in the human malaria parasite

(2010) N. Ponts et al.   GENOME RESEARCH

The Apicomplexan AP2 family: Integral factors regulating Plasmodium development

(2010) Heather J. Painter et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Molecular Dissection of Telomeric Repeat-Containing RNA Biogenesis Unveils the Presence of Distinct and Multiple Regulatory Pathways

(2010) A. Porro et al.   MOLECULAR AND CELLULAR BIOLOGY

New insights into the blood-stage transcriptome ofPlasmodium falciparumusing RNA-Seq

(2010) Thomas D. Otto et al.   MOLECULAR MICROBIOLOGY

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

(2010) Rajnish A. Gupta et al.   NATURE

Moving in and renovating: exporting proteins from Plasmodium into host erythrocytes

(2010) Daniel E. Goldberg et al.   NATURE REVIEWS MICROBIOLOGY

The non-coding RNA TERRA is a natural ligand and direct inhibitor of human telomerase

(2010) Sophie Redon et al.   NUCLEIC ACIDS RESEARCH

Telomeric repeat-containing RNA structure in living cells

(2010) Y. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes

(2010) M.-C. Tsai et al.   SCIENCE

Noncoding RNA Gas5 Is a Growth Arrest- and Starvation-Associated Repressor of the Glucocorticoid Receptor

(2010) T. Kino et al.   Science Signaling

The epigenetic role of non-coding RNA transcription and nuclear organization in immunoglobulin repertoire generation

(2010) Anne E. Corcoran   SEMINARS IN IMMUNOLOGY

Identification and Genome-Wide Prediction of DNA Binding Specificities for the ApiAP2 Family of Regulators from the Malaria Parasite

(2010) Tracey L. Campbell et al.   PLoS Pathogens

A Major Role for the Plasmodium falciparum ApiAP2 Protein PfSIP2 in Chromosome End Biology

(2010) Christian Flueck et al.   PLoS Pathogens

Histone Deacetylases Play a Major Role in the Transcriptional Regulation of the Plasmodium falciparum Life Cycle

(2010) Balbir K. Chaal et al.   PLoS Pathogens

Genome-wide nucleosome mapping of Plasmodium falciparum reveals histone-rich coding and histone-poor intergenic regions and chromatin remodeling of core and subtelomeric genes

(2009) Scott J Westenberger et al.   BMC GENOMICS

Genetics of antigenic variation in Plasmodium falciparum

(2009) Ron Dzikowski et al.   CURRENT GENETICS

TERRA: telomeric repeat-containing RNA

(2009) Brian Luke et al.   EMBO JOURNAL

Patterns of Gene-Specific and Total Transcriptional Activity during thePlasmodium falciparumIntraerythrocytic Developmental Cycle

(2009) Jennifer S. Sims et al.   EUKARYOTIC CELL

Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome

(2009) J. T. Lee   GENES & DEVELOPMENT

Emerging similarities in epigenetic gene silencing by long noncoding RNAs

(2009) Takashi Nagano et al.   MAMMALIAN GENOME

MLL Associates with Telomeres and Regulates Telomeric Repeat-Containing RNA Transcription

(2009) C. Caslini et al.   MOLECULAR AND CELLULAR BIOLOGY

TERRA RNA Binding to TRF2 Facilitates Heterochromatin Formation and ORC Recruitment at Telomeres

(2009) Zhong Deng et al.   MOLECULAR CELL

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

(2009) Mitchell Guttman et al.   NATURE

Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry

(2009) Allison M Bond et al.   NATURE NEUROSCIENCE

Malaria parasite proteins that remodel the host erythrocyte

(2009) Alexander G. Maier et al.   NATURE REVIEWS MICROBIOLOGY

A global view of the nonprotein-coding transcriptome in Plasmodium falciparum

(2009) Carsten A. Raabe et al.   NUCLEIC ACIDS RESEARCH

Molecular genetics and comparative genomics reveal RNAi is not functional in malaria parasites

(2009) Jake Baum et al.   NUCLEIC ACIDS RESEARCH

Custom Design and Analysis of High-Density Oligonucleotide Bacterial Tiling Microarrays

(2009) Gard O. S. Thomassen et al.   PLoS One

Chromatin regulation and non-coding RNAs at mammalian telomeres

(2009) Stefan Schoeftner et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The Genetic Signatures of Noncoding RNAs

(2009) John S. Mattick   PLoS Genetics

Antigenic Variation in Plasmodium falciparum

(2008) Artur Scherf et al.   Annual Review of Microbiology

SnapShot: var Gene Expression in the Malaria Parasite

(2008) Artur Scherf et al.   CELL

Transcriptional control and gene silencing inPlasmodium falciparum

(2008) Bradley I. Coleman et al.   CELLULAR MICROBIOLOGY

Control of gene expression in Plasmodium falciparum – Ten years on

(2008) Paul Horrocks et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Kcnq1ot1 Antisense Noncoding RNA Mediates Lineage-Specific Transcriptional Silencing through Chromatin-Level Regulation

(2008) Radha Raman Pandey et al.   MOLECULAR CELL

The Rat1p 5′ to 3′ Exonuclease Degrades Telomeric Repeat-Containing RNA and Promotes Telomere Elongation in Saccharomyces cerevisiae

(2008) Brian Luke et al.   MOLECULAR CELL

Telomeric RNA enters the game

(2008) Béatrice Horard et al.   NATURE CELL BIOLOGY

Specific DNA-binding by Apicomplexan AP2 transcription factors

(2008) E. K. De Silva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA