Structural complexity of Dengue virus untranslated regions: cis -acting RNA motifs and pseudoknot interactions modulating functionality of the viral genome

A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication

(2012) Andrew Tuplin et al.   NUCLEIC ACIDS RESEARCH

Automated 3D structure composition for large RNAs

(2012) Mariusz Popenda et al.   NUCLEIC ACIDS RESEARCH

Novel ATP-Independent RNA Annealing Activity of the Dengue Virus NS3 Helicase

(2012) Leopoldo G. Gebhard et al.   PLoS One

Identification ofCis-Acting Elements in the 3′-Untranslated Region of the Dengue Virus Type 2 RNA That Modulate Translation and Replication

(2011) Mark Manzano et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Attenuation of loop-receptor interactions with pseudoknot formation

(2011) Kirill A. Afonin et al.   NUCLEIC ACIDS RESEARCH

NF90 Binds the Dengue Virus RNA 3′ Terminus and Is a Positive Regulator of Dengue Virus Replication

(2011) Raúl C. Gomila et al.   PLoS One

Quantitative mass spectrometry of DENV-2 RNA-interacting proteins reveals that the DEAD-box RNA helicase DDX6 binds the DB1 and DB2 3’ UTR structures

(2011) Alex Michael Ward et al.   RNA Biology

Composition of the sequence downstream of the dengue virus 5′ cyclization sequence (dCS) affects viral RNA replication

(2011) Peter Friebe et al.   VIROLOGY

RNA Sequences and Structures Required for the Recruitment and Activity of the Dengue Virus Polymerase

(2010) Claudia V. Filomatori et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Interplay of RNA Elements in the Dengue Virus 5' and 3' Ends Required for Viral RNA Replication

(2010) P. Friebe et al.   JOURNAL OF VIROLOGY

An RNA Pseudoknot Is Required for Production of Yellow Fever Virus Subgenomic RNA by the Host Nuclease XRN1

(2010) P. A. G. C. Silva et al.   JOURNAL OF VIROLOGY

Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3' UTR of turnip crinkle virus

(2010) X. Zuo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A balance between circular and linear forms of the dengue virus genome is crucial for viral replication

(2010) S. M. Villordo et al.   RNA

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Translational Regulation by the 3′ Untranslated Region of the Dengue Type 2 Virus Genome

(2009) Yan Wei et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots

(2009) Yanga Byun et al.   BIOINFORMATICS

A Discontinuous RNA Platform Mediates RNA Virus Replication: Building an Integrated Model for RNA–based Regulation of Viral Processes

(2009) Baodong Wu et al.   PLoS Pathogens

RNA pseudoknots and the regulation of protein synthesis

(2008) Ian Brierley et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

A Highly Structured, Nuclease-Resistant, Noncoding RNA Produced by Flaviviruses Is Required for Pathogenicity

(2008) Gorben P. Pijlman et al.   Cell Host & Microbe

Structural Domains within the 3' Untranslated Region of Turnip Crinkle Virus

(2008) J. C. McCormack et al.   JOURNAL OF VIROLOGY

Structural and Functional Studies of the Promoter Element for Dengue Virus RNA Replication

(2008) M. F. Lodeiro et al.   JOURNAL OF VIROLOGY

Identification of Mutated Cyclization Sequences That Permit Efficient Replication of West Nile Virus Genomes: Use in Safer Propagation of a Novel Vaccine Candidate

(2008) R. Suzuki et al.   JOURNAL OF VIROLOGY

Conformational Changes in the Solution Structure of the Dengue Virus 5' End in the Presence and Absence of the 3' Untranslated Region

(2008) C. Polacek et al.   JOURNAL OF VIROLOGY

High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis

(2008) Somdeb Mitra et al.   NUCLEIC ACIDS RESEARCH

Resistance to RevM10 inhibition reflects a conformational switch in the HIV-1 Rev response element

(2008) M. Legiewicz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accurate SHAPE-directed RNA structure determination

(2008) K. E. Deigan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A complex RNA motif defined by three discontinuous 5-nucleotide-long strands is essential for Flavivirus RNA replication

(2008) B.-H. Song et al.   RNA

Functional analysis of dengue virus cyclization sequences located at the 5′ and 3′UTRs

(2008) Diego E. Alvarez et al.   VIROLOGY

Genome cyclization as strategy for flavivirus RNA replication

(2008) Sergio M. Villordo et al.   VIRUS RESEARCH

High-Throughput SHAPE Analysis Reveals Structures in HIV-1 Genomic RNA Strongly Conserved across Distinct Biological States

(2008) Kevin A Wilkinson et al.   PLOS BIOLOGY